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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412923 (13 seq.)
>A171002089
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
8063
8133
+
Gly
CCC
-
¡û
>A171003820
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
2004975
2005046
+
Gly
CCC
-
¡û
>A171005678
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1419215
1419145
-
Gly
CCC
-
¡û
>A171006108
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
792923
792994
+
Gly
CCC
-
¡û
>WENV181214021
OFBW01006802
[OFBW] metagenome; hydrothermal vent
888
818
-
Gly
CCC
[ENA]
¢þ
>At0620
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1842387
1842457
+
Gly
CCC
[Ensembl]
¡û
>WENV170675819
LDZQ01000614
[LDZQ] terrestrial metagenome; oil reservoir sample I2
9629
9700
+
Gly
CCC
[ENA]
¢þ
>WENV170676396
LDZR01002394
[LDZR] terrestrial metagenome; oil reservoir sample K2
9629
9700
+
Gly
CCC
[ENA]
¢þ
>WENV170779085
LZCG01000491
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1342
1271
-
Gly
CCC
[ENA]
¢þ
>WENV170779189
LZQN01000004
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
89328
89257
-
Gly
CCC
[ENA]
¢þ
>W1910200377
FJNF01000194
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
32343
32414
+
Gly
CCC
[ENA]
¡û
>W1610612346
LGEQ01000041
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
9629
9700
+
Gly
CCC
[ENA]
¡û
>W1610612614
LGEX01000036
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
9629
9700
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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