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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.415519 (68 seq.)
>WENV180096285
MTBK01121110
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
635
562
-
Cys
GCA
[ENA]
¢þ
>WENV180097157
MTBK01171794
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
571
644
+
Cys
GCA
[ENA]
¢þ
>WENV180522042
OCHG01000025
[OCHG] human gut metagenome; human gut
35423
35350
-
Cys
GCA
[ENA]
¢þ
>WENV180554950
OCJO01045117
[OCJO] human gut metagenome; human gut
247
174
-
Cys
GCA
[ENA]
¢þ
>WENV180561217
OCKX01050858
[OCKX] human gut metagenome; human gut
170
97
-
Cys
GCA
[ENA]
¢þ
>WENV180572331
OCLU01045904
[OCLU] human gut metagenome; human gut
500
573
+
Cys
GCA
[ENA]
¢þ
>WENV180614634
OCPY01055689
[OCPY] human gut metagenome; human gut
17
90
+
Cys
GCA
[ENA]
¢þ
>WENV180665217
OCVV011182154
[OCVV] gut metagenome; gut
342
269
-
Cys
GCA
[ENA]
¢þ
>WENV180665222
OCVV011182154
[OCVV] gut metagenome; gut
342
269
-
Cys
GCA
[ENA]
¢þ
>WENV181425807
OGCQ01001194
[OGCQ] human gut metagenome; human gut
33677
33604
-
Cys
GCA
[ENA]
¢þ
>WENV181598877
OGLB01008672
[OGLB] metagenome; Human gut stool
10
83
+
Cys
GCA
[ENA]
¢þ
>WENV181903494
OGXX01001389
[OGXX] human gut metagenome; faeces
23552
23625
+
Cys
GCA
[ENA]
¢þ
>WENV182029423
OHCQ01002711
[OHCQ] human gut metagenome; feces
3877
3804
-
Cys
GCA
[ENA]
¢þ
>WENV182054822
OHEK01029128
[OHEK] human gut metagenome; feces
476
403
-
Cys
GCA
[ENA]
¢þ
>WENV182056569
OHEN01000889
[OHEN] human gut metagenome; feces
7578
7505
-
Cys
GCA
[ENA]
¢þ
>WENV182113556
OHIX01029092
[OHIX] human gut metagenome; feces
697
624
-
Cys
GCA
[ENA]
¢þ
>WENV182148719
OHLF01003107
[OHLF] human gut metagenome; feces
97
170
+
Cys
GCA
[ENA]
¢þ
>WENV182217057
OHQO01001040
[OHQO] human gut metagenome; feces
5283
5210
-
Cys
GCA
[ENA]
¢þ
>WENV182240358
OHSE01004902
[OHSE] human gut metagenome; feces
2063
1990
-
Cys
GCA
[ENA]
¢þ
>WENV182266672
OHTY01039774
[OHTY] human gut metagenome; feces
215
288
+
Cys
GCA
[ENA]
¢þ
>WENV182276929
OHUQ01000335
[OHUQ] human gut metagenome; feces
7282
7355
+
Cys
GCA
[ENA]
¢þ
>WENV182277929
OHUS01000091
[OHUS] human gut metagenome; feces
2536
2463
-
Cys
GCA
[ENA]
¢þ
>WENV182288389
OHVT01008055
[OHVT] human gut metagenome; feces
2535
2462
-
Cys
GCA
[ENA]
¢þ
>WENV182301534
OHWR01008650
[OHWR] human gut metagenome; feces
100
173
+
Cys
GCA
[ENA]
¢þ
>WENV182304828
OHXA01001559
[OHXA] human gut metagenome; feces
1541
1614
+
Cys
GCA
[ENA]
¢þ
>WENV182347033
OIAV01001232
[OIAV] human gut metagenome; feces
566
639
+
Cys
GCA
[ENA]
¢þ
>WENV182349614
OIBC01004452
[OIBC] human gut metagenome; feces
2536
2463
-
Cys
GCA
[ENA]
¢þ
>WENV182367320
OICL01009881
[OICL] human gut metagenome; feces
2535
2462
-
Cys
GCA
[ENA]
¢þ
>WENV182368054
OICM01004349
[OICM] human gut metagenome; feces
2536
2463
-
Cys
GCA
[ENA]
¢þ
>WENV182374495
OIDB01002358
[OIDB] human gut metagenome; feces
3134
3061
-
Cys
GCA
[ENA]
¢þ
>WENV182449950
OILT01004612
[OILT] human gut metagenome; human gut
586
659
+
Cys
GCA
[ENA]
¢þ
>WENV182516126
OIWN01012860
[OIWN] human gut metagenome; faeces
2314
2241
-
Cys
GCA
[ENA]
¢þ
>WENV182536083
OIXH01000148
[OIXH] human gut metagenome; faeces
76879
76806
-
Cys
GCA
[ENA]
¢þ
>WENV182539134
OIXV01001571
[OIXV] human gut metagenome; faeces
98
171
+
Cys
GCA
[ENA]
¢þ
>WENV182673839
OJNP01000381
[OJNP] human gut metagenome; human gut
33813
33740
-
Cys
GCA
[ENA]
¢þ
>WENV182680358
OJNU01000420
[OJNU] human gut metagenome; human gut
33813
33740
-
Cys
GCA
[ENA]
¢þ
>WENV182696209
OJOK01001533
[OJOK] human gut metagenome; human gut
9585
9512
-
Cys
GCA
[ENA]
¢þ
>WENV182899764
OKST01001061
[OKST] human gut metagenome; feces
13240
13167
-
Cys
GCA
[ENA]
¢þ
>WENV182910915
OKTJ01021835
[OKTJ] human gut metagenome; feces
8
81
+
Cys
GCA
[ENA]
¢þ
>WENV182922052
OKUC01008384
[OKUC] human gut metagenome; feces
99
172
+
Cys
GCA
[ENA]
¢þ
>WENV182924366
OKUG01004181
[OKUG] human gut metagenome; feces
2528
2455
-
Cys
GCA
[ENA]
¢þ
>WENV183006791
OLDF01011814
[OLDF] human gut metagenome; human gut
895
822
-
Cys
GCA
[ENA]
¢þ
>WENV183122405
OLNV01038746
[OLNV] human gut metagenome; faeces
4
77
+
Cys
GCA
[ENA]
¢þ
>WENV183178575
OLPH01000211
[OLPH] human gut metagenome; faeces
79151
79078
-
Cys
GCA
[ENA]
¢þ
>WENV183194380
OLPS01082014
[OLPS] human gut metagenome; faeces
602
529
-
Cys
GCA
[ENA]
¢þ
>WENV183272502
OLRX01000001
[OLRX] human gut metagenome; faeces
518016
517943
-
Cys
GCA
[ENA]
¢þ
>WENV183294619
OLSK01042340
[OLSK] human gut metagenome; faeces
14
87
+
Cys
GCA
[ENA]
¢þ
>WENV170030257
CDYI01005944
[CDYI] gut metagenome; human stools
30027
30100
+
Cys
GCA
[ENA]
¢þ
>WENV170032474
CDYK01003650
[CDYK] gut metagenome; human stools
170650
170723
+
Cys
GCA
[ENA]
¢þ
>WENV170563579
CZCB01021755
[CZCB] anaerobic digester metagenome; anaerobic digester
961
1034
+
Cys
GCA
[ENA]
¢þ
>WENV170687220
LFRM01183351
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2047
1974
-
Cys
GCA
[ENA]
¢þ
>WENV170975309
MTKZ01000108
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
36210
36137
-
Cys
GCA
[ENA]
¢þ
>C181047166
CP020874
Bacillota
Bacillus velezensis GYL4 [CP020874]
1222830
1222760
-
Cys
GCA
-
¡û
>C181070212
CP022654
Bacillota
Bacillus velezensis SCDB 291 [CP022654]
1349191
1349121
-
Cys
GCA
-
¡û
>C181088562
CP023666
Bacillota
Bacillus paralicheniformis Bac48 [CP023666]
1345252
1345182
-
Cys
GCA
-
¡û
>C191064332
CP029473
Bacillota
Bacillus velezensis Hx05 [CP029473]
1078508
1078438
-
Cys
GCA
-
¡û
>C191085352
CP032154
Bacillota
Bacillus velezensis ZF2 [CP032154]
862828
862898
+
Cys
GCA
-
¡û
>C191095789
CP032852
Bacillota
Bacillus subtilis subsp. subtilis GFR-12 [CP032852]
1674083
1674153
+
Cys
GCA
-
¡û
>C191096249
CP032861
Bacillota
Bacillus subtilis subsp. subtilis N1-1 [CP032861]
1596850
1596780
-
Cys
GCA
-
¡û
>C191126690
CP034484
Bacillota
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 [CP034484]
952379
952449
+
Cys
GCA
-
¡û
>C191135959
CP035163
Bacillota
Bacillus subtilis SRCM103923 [CP035163]
909896
909966
+
Cys
GCA
-
¡û
>W1910888231
NERK01000007
Bacillota
Bacillus halotolerans RSCu-8D [NERK]
82
152
+
Cys
GCA
[ENA]
¡û
>W1911145867
NPCS01000112
Bacillota
Bacillus sonorensis 7710 [NPCS]
407
477
+
Cys
GCA
[ENA]
¡û
>W1911192616
NQYE01000001
Bacillota
Bacillus subtilis PK5_26 [NQYE]
1710535
1710605
+
Cys
GCA
[ENA]
¡û
>W1610606884
LFTJ01000110
Bacillota
Clostridiales bacterium DTU078 [LFTJ]
2047
1974
-
Cys
GCA
[ENA]
¡û
>W1710511730
FMYW01000005
Bacillota
Succiniclasticum ruminis [FMYW]
88140
88067
-
Cys
GCA
[ENA]
¡û
>W1710560543
FONL01000026
Bacillota
Succiniclasticum ruminis DSM 9236 [FONL]
3765
3692
-
Cys
GCA
[ENA]
¡û
>W1710728171
LFTJ01000110
Bacillota
Clostridiales bacterium DTU078 [LFTJ]
2047
1974
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK