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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.418607 (20 seq.)
>W1711488978
MKIE01000005
Bacillota
Andreesenia angusta [MKIE]
176276
176202
-
Glu
TTC
[ENA]
¡û
>W1711489009
MKIE01000009
Bacillota
Andreesenia angusta [MKIE]
12389
12463
+
Glu
TTC
[ENA]
¡û
>W1711489017
MKIE01000014
Bacillota
Andreesenia angusta [MKIE]
42800
42726
-
Glu
TTC
[ENA]
¡û
>WENV180844351
ODKN01084312
[ODKN] human metagenome; G_DNA_Supragingival plaque
99
25
-
Glu
TTC
[ENA]
¢þ
>W141167378
AXUD01000012
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
108883
108809
-
Glu
TTC
[ENA]
¡û
>WENV181723633
OGPW01011544
[OGPW] human gut metagenome; faeces
1699
1625
-
Glu
TTC
[ENA]
¢þ
>WENV181765974
OGQY01106872
[OGQY] human gut metagenome; faeces
429
502
+
Glu
TTC
[ENA]
¢þ
>WENV181977414
OHAD01077827
[OHAD] human gut metagenome; faeces
82
8
-
Glu
TTC
[ENA]
¢þ
>WENV183187756
OLPO01065806
[OLPO] human gut metagenome; faeces
564
638
+
Glu
TTC
[ENA]
¢þ
>WENV183210826
OLQC01006952
[OLQC] human gut metagenome; faeces
1686
1612
-
Glu
TTC
[ENA]
¢þ
>WENV183232488
OLQU01015924
[OLQU] human gut metagenome; faeces
640
566
-
Glu
TTC
[ENA]
¢þ
>WENV183515443
OMKS01064469
[OMKS] sediment metagenome; hot spring sediment
631
705
+
Glu
TTC
[ENA]
¢þ
>WENV183747030
PPCM01000118
[PPCM] marine sediment metagenome; marine sediment
121860
121934
+
Glu
TTC
[ENA]
¢þ
>WENV183747035
PPCM01000123
[PPCM] marine sediment metagenome; marine sediment
15320
15394
+
Glu
TTC
[ENA]
¢þ
>WENV170784426
MCHG01006337
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
85
156
+
Glu
TTC
[ENA]
¢þ
>C131003056
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
997190
997264
+
Glu
TTC
[Ensembl]
¡û
>C131003070
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1008372
1008446
+
Glu
TTC
[Ensembl]
¡û
>C131003086
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1009958
1010032
+
Glu
TTC
[Ensembl]
¡û
>C131003107
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3016854
3016780
-
Glu
TTC
[Ensembl]
¡û
>C131003117
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3001275
3001201
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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