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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421363 (55 seq.)
>W1710809668
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
102465
102538
+
Gly
TCC
[ENA]
¡û
>W1710809674
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
103117
103190
+
Gly
TCC
[ENA]
¡û
>W131082817
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
153989
154062
+
Gly
TCC
[ENA]
¡û
>W131082825
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
154785
154858
+
Gly
TCC
[ENA]
¡û
>W131082834
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
155662
155735
+
Gly
TCC
[ENA]
¡û
>W131082864
ANZB01000023
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
8501
8428
-
Gly
TCC
[ENA]
¡û
>W1711342437
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
170471
170544
+
Gly
TCC
[ENA]
¡û
>C171019440
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
74321
74394
+
Gly
TCC
-
¡û
>C171019446
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1453997
1454070
+
Gly
TCC
-
¡û
>C171019454
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1454793
1454866
+
Gly
TCC
-
¡û
>C171019463
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1455670
1455743
+
Gly
TCC
-
¡û
>C171019519
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
74321
74394
+
Gly
TCC
-
¡û
>C171019525
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453032
1453105
+
Gly
TCC
-
¡û
>C171019533
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453828
1453901
+
Gly
TCC
-
¡û
>C171019542
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1454705
1454778
+
Gly
TCC
-
¡û
>WENV180272306
OBEQ012366924
[OBEQ] groundwater metagenome; groundwater
794
721
-
Gly
TCC
[ENA]
¢þ
>WENV180628091
OCQO01035235
[OCQO] human gut metagenome; human gut
175
102
-
Gly
TCC
[ENA]
¢þ
>WENV180648616
OCSJ01054754
[OCSJ] human gut metagenome; human gut
56
129
+
Gly
CCC
[ENA]
¢þ
>WENV180651836
OCVV010000467
[OCVV] gut metagenome; gut
38265
38192
-
Gly
TCC
[ENA]
¢þ
>WENV180651845
OCVV010000467
[OCVV] gut metagenome; gut
38265
38192
-
Gly
TCC
[ENA]
¢þ
>WENV180680465
OCVV012543272
[OCVV] gut metagenome; gut
132
205
+
Gly
TCC
[ENA]
¢þ
>WENV180680466
OCVV012543272
[OCVV] gut metagenome; gut
132
205
+
Gly
TCC
[ENA]
¢þ
>W141088301
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
16798
16725
-
Gly
TCC
[ENA]
¡û
>WENV181091874
OEBC01113483
[OEBC] human metagenome; G_DNA_Supragingival plaque
379
452
+
Gly
TCC
[ENA]
¢þ
>W141246583
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
15312
15385
+
Gly
TCC
[ENA]
¡û
>WENV170686402
LFRM01142699
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
377
304
-
Gly
CCC
[ENA]
¢þ
>WENV170690292
LFRM01333756
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
379
452
+
Gly
TCC
[ENA]
¢þ
>WENV170720973
LSQX01173503
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17407
17480
+
Gly
CCC
[ENA]
¢þ
>C191089295
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648030
648103
+
Gly
TCC
-
¡û
>C191089302
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648653
648726
+
Gly
TCC
-
¡û
>C191089306
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
648998
649071
+
Gly
TCC
-
¡û
>C191089313
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
649647
649720
+
Gly
TCC
-
¡û
>C191106437
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2307600
2307527
-
Gly
TCC
-
¡û
>C191184286
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944858
2944785
-
Gly
TCC
-
¡û
>C191184294
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944188
2944115
-
Gly
TCC
-
¡û
>C191184298
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943847
2943774
-
Gly
TCC
-
¡û
>W141803754
JPGY01000001
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
14495
14568
+
Gly
TCC
[ENA]
¡û
>W141803764
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
107082
107009
-
Gly
TCC
[ENA]
¡û
>W141803772
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
106286
106213
-
Gly
TCC
[ENA]
¡û
>W141803781
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
105409
105336
-
Gly
TCC
[ENA]
¡û
>C151047016
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
74321
74394
+
Gly
TCC
[Ensembl]
¡û
>C151047022
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453036
1453109
+
Gly
TCC
[Ensembl]
¡û
>C151047030
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453832
1453905
+
Gly
TCC
[Ensembl]
¡û
>C151047039
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1454709
1454782
+
Gly
TCC
[Ensembl]
¡û
>C151047095
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
74321
74394
+
Gly
TCC
[Ensembl]
¡û
>C151047101
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453036
1453109
+
Gly
TCC
[Ensembl]
¡û
>C151047109
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453832
1453905
+
Gly
TCC
[Ensembl]
¡û
>C151047118
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1454709
1454782
+
Gly
TCC
[Ensembl]
¡û
>W1510755129
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871131
871204
+
Gly
TCC
[ENA]
¡û
>W1510755137
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871851
871924
+
Gly
TCC
[ENA]
¡û
>C131008595
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114185
2114112
-
Gly
TCC
[Ensembl]
¡û
>W1610673774
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
102465
102538
+
Gly
TCC
[ENA]
¡û
>W1610673780
LKET01000016
Bacillota
Oxobacter pfennigii [LKET]
103117
103190
+
Gly
TCC
[ENA]
¡û
>W1710602541
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
17628
17701
+
Gly
TCC
[ENA]
¡û
>W1710602548
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
18231
18304
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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