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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42594 (8 seq.)
>w027435
ABCE01000016
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
123318
123228
-
Ser
GCT
[ENA]
¡û
>WENV170014996
AZIC01015637
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
89
175
+
Ser
GCT
[ENA]
¡û
>WENV170121146
CENL01054026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
486135
486221
+
Ser
GCT
[ENA]
¡û
>C241044028
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3711617
3711703
+
Ser
GCT
-
¡û
>C241044522
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1139952
1139866
-
Ser
GCT
-
¡û
>C241044546
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
3684240
3684326
+
Ser
GCT
-
¡û
>C241069935
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3781157
3781243
+
Ser
GCT
-
¡û
>C241083648
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
3918035
3917949
-
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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