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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42636 (19 seq.)
>WENV180098529
MTBK01251646
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
456
368
-
Leu
CAA
[ENA]
¡û
>W141088610
AUVG01000136
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
4222
4134
-
Leu
CAA
[ENA]
¡û
>WENV170561363
CZCA01007228
[CZCA] anaerobic digester metagenome; anaerobic digester
2913
3001
+
Leu
CAA
[ENA]
¡û
>WENV170562255
CZCB01001669
[CZCB] anaerobic digester metagenome; anaerobic digester
12873
12961
+
Leu
CAA
[ENA]
¡û
>WENV170562272
CZCB01001732
[CZCB] anaerobic digester metagenome; anaerobic digester
1525
1437
-
Leu
CAA
[ENA]
¡û
>WENV170684694
LFRM01053268
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1702
1614
-
Leu
CAA
[ENA]
¡û
>WENV170685959
LFRM01117401
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8720
8632
-
Leu
CAA
[ENA]
¡û
>WENV170725351
LSQX01339719
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
301
213
-
Leu
CAA
[ENA]
¡û
>C231539406
CP110889
Bacillota
Thermoclostridium stercorarium RKWS1 [CP110889]
776651
776739
+
Leu
CAA
-
¡û
>C161076018
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
766297
766385
+
Leu
CAA
[Ensembl]
¡û
>C161076067
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
772141
772229
+
Leu
CAA
[Ensembl]
¡û
>W1610043712
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
91708
91796
+
Leu
CAA
[ENA]
¡û
>C131011035
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
769616
769704
+
Leu
CAA
-
¡û
>C131011901
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
769503
769591
+
Leu
CAA
-
¡û
>W1610606043
LFSN01000027
Bacillota
Clostridia bacterium DTU030 [LFSN]
1702
1614
-
Leu
CAA
[ENA]
¡û
>W1610606639
LFTC01000022
Bacillota
Clostridiales bacterium DTU083 [LFTC]
8720
8632
-
Leu
CAA
[ENA]
¡û
>W1710040872
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
91708
91796
+
Leu
CAA
[ENA]
¡û
>W1710727330
LFSN01000027
Bacillota
Clostridia bacterium DTU030 [LFSN]
1702
1614
-
Leu
CAA
[ENA]
¡û
>W1710727926
LFTC01000022
Bacillota
Clostridiales bacterium DTU083 [LFTC]
8720
8632
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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