This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.440354 (20 seq.)
>W131046216
AMSG01000001
Bacteroidota
Galbibacter marinus ck-I2-15 [AMSG]
230573
230500
-
Cys
GCA
[ENA]
¡û
>W131164184
ARAI01000034
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
176283
176210
-
Cys
GCA
[ENA]
¡û
>W131234651
AUKX01000050
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
33259
33332
+
Cys
GCA
[ENA]
¡û
>C171047808
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
1600511
1600584
+
Cys
GCA
-
¡û
>W141079221
ATLI01000029
Bacteroidota
Cellulophaga baltica 18 [ATLI]
5235
5306
+
Cys
GCA
[ENA]
¡û
>WENV180933217
ODTQ01053187
[ODTQ] human metagenome; G_DNA_Buccal mucosa
81
10
-
Cys
GCA
[ENA]
¢þ
>WENV181007714
ODWE01000515
[ODWE] human metagenome; G_DNA_Supragingival plaque
21640
21569
-
Cys
GCA
[ENA]
¢þ
>WENV181050040
ODYD01005136
[ODYD] human metagenome; G_DNA_Supragingival plaque
4233
4162
-
Cys
GCA
[ENA]
¢þ
>WENV170121446
CENM01023757
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV170147265
CENZ01126753
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
617
690
+
Cys
GCA
[ENA]
¢þ
>WENV170652841
JRYH01044333
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
199
126
-
Cys
GCA
[ENA]
¢þ
>C181063584
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
1202336
1202265
-
Cys
GCA
-
¡û
>C181145116
CP027062
Bacteroidota
Pukyongia salina RR4-38 [CP027062]
1167225
1167154
-
Cys
GCA
-
¡û
>C191213492
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1741365
1741294
-
Cys
GCA
-
¡û
>W1910626965
LKTR01000021
Bacteroidota
Salegentibacter salarius KCTC 12974 [LKTR]
55872
55801
-
Cys
GCA
[ENA]
¡û
>W1810118430
PHQQ01000016
Bacteroidota
Arenibacter catalasegens P308H10 [PHQQ]
64922
64851
-
Cys
GCA
[ENA]
¡û
>W1810144825
PIOB01000001
Bacteroidota
Arenibacter hampyeongensis JCM 17788 [PIOB]
391107
391178
+
Cys
GCA
[ENA]
¡û
>W1810282791
PSZN01000023
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
74953
75024
+
Cys
GCA
[ENA]
¡û
>W1810914361
QVON01000012
Bacteroidota
Arenibacter sp. P308M17 [QVON]
4053
3980
-
Cys
GCA
[ENA]
¡û
>C151062889
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1209469
1209398
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK