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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448553 (124 seq.)
>W1710853363
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
736760
736687
-
Gln
TTG
[ENA]
¡û
>W1710870416
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
143692
143619
-
Gln
TTG
[ENA]
¡û
>W1710871290
LMLE01000013
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
18048
18121
+
Gln
TTG
[ENA]
¡û
>W1710888304
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
150936
150863
-
Gln
TTG
[ENA]
¡û
>W131145916
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1565871
1565944
+
Gln
TTG
[ENA]
¡û
>W1711506306
MKWH01000026
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
121115
121042
-
Gln
TTG
[ENA]
¡û
>C171089520
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5807106
5807179
+
Gln
TTG
-
¡û
>C171089521
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5807348
5807419
+
Gln
TTG
-
¡û
>C171117340
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
6040737
6040810
+
Gln
TTG
-
¡û
>C171118456
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5520611
5520684
+
Gln
TTG
-
¡û
>C171118457
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5520853
5520924
+
Gln
TTG
-
¡û
>w027827
ABCM01000036
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
9249
9174
-
Gln
TTG
[ENA]
¡û
>W141142875
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
224113
224040
-
Gln
TTG
[ENA]
¡û
>W141187600
AYMG01000015
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
18919
18992
+
Gln
TTG
[ENA]
¡û
>W141292034
JAUG01000067
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
20486
20559
+
Gln
TTG
[ENA]
¡û
>WENV183726669
PJTO01000061
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
121834
121763
-
Gln
TTG
[ENA]
¡û
>WENV183727658
PJTP01000065
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
121904
121833
-
Gln
TTG
[ENA]
¡û
>WENV183728724
PJTQ01000318
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
452
381
-
Gln
TTG
[ENA]
¡û
>WENV183728725
PJTQ01000318
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
210
139
-
Gln
TTG
[ENA]
¡û
>WENV183730191
PJTR01002857
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1163
1092
-
Gln
TTG
[ENA]
¡û
>WENV183730551
PJTS01000126
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
43907
43978
+
Gln
TTG
[ENA]
¡û
>WENV183734903
PJUA01000125
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
409
480
+
Gln
TTG
[ENA]
¡û
>WENV183735601
PJUB01000147
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
46865
46794
-
Gln
TTG
[ENA]
¡û
>WENV183736582
PJUC01016723
[PJUC] soil metagenome; Soil enriched on filter paper
409
480
+
Gln
TTG
[ENA]
¡û
>WENV183736583
PJUC01016723
[PJUC] soil metagenome; Soil enriched on filter paper
651
722
+
Gln
TTG
[ENA]
¡û
>WENV183741225
PJUF01060610
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
278
207
-
Gln
TTG
[ENA]
¡û
>WENV183742529
PJUI01000008
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
155706
155777
+
Gln
TTG
[ENA]
¡û
>WENV183743548
PJUJ01005427
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
477
406
-
Gln
TTG
[ENA]
¡û
>WENV171003293
NNBT01003544
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
2522
2451
-
Gln
TTG
[ENA]
¡û
>C181094355
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5023193
5023264
+
Gln
TTG
-
¡û
>C191226476
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
360173
360102
-
Gln
TTG
-
¡û
>W09109599
ABUJ01000008
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
23829
23902
+
Gln
TTG
[ENA]
¡û
>W1920000345
MCAQ01000005
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
139578
139507
-
Gln
TTG
[ENA]
¡û
>C09108536
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
702662
702735
+
Gln
TTG
[Ensembl]
¡û
>W1910664362
MCAQ01000005
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
139820
139749
-
Gln
TTG
[ENA]
¡û
>W1911647666
QAJQ01000021
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
44444
44515
+
Gln
TTG
[ENA]
¡û
>W1810474625
QAIL01000038
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
1962
1891
-
Gln
TTG
[ENA]
¡û
>W1810503846
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
913138
913209
+
Gln
TTG
[ENA]
¡û
>W1810503905
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
835984
836055
+
Gln
TTG
[ENA]
¡û
>W1810606106
QGNY01000003
Bacteroidota
Pedobacter paludis R-8 [QGNY]
196790
196719
-
Gln
TTG
[ENA]
¡û
>W1810606166
QGNZ01000003
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
463107
463036
-
Gln
TTG
[ENA]
¡û
>W1810676161
QKLU01000008
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
245507
245578
+
Gln
TTG
[ENA]
¡û
>W1810704233
QMHN01000004
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
516988
517059
+
Gln
TTG
[ENA]
¡û
>W1810704256
QMHO01000003
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
444069
443998
-
Gln
TTG
[ENA]
¡û
>W1810704304
QMHP01000004
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
407648
407719
+
Gln
TTG
[ENA]
¡û
>W1810704333
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
1031776
1031847
+
Gln
TTG
[ENA]
¡û
>W1810720084
QNQU01000016
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
148079
148008
-
Gln
TTG
[ENA]
¡û
>W1810761060
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
960573
960644
+
Gln
TTG
[ENA]
¡û
>W1810885524
QUNJ01000005
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
96775
96704
-
Gln
TTG
[ENA]
¡û
>W1810885612
QUNL01000021
Bacteroidota
Pedobacter sp. OV280 [QUNL]
62765
62694
-
Gln
TTG
[ENA]
¡û
>SRA1014804
SRR023845.320344
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
169
98
-
Gln
TTG
[SRA]
>W2010311567
CABWMV010000007
Bacteroidota
Sphingobacterium sp. 8BC [CABWMV]
172121
172192
+
Gln
TTG
[ENA]
¡û
>W2010321507
CACSJW010000002
Bacteroidota
Sphingobacterium sp. 18053 [CACSJW]
44009
44080
+
Gln
TTG
[ENA]
¡û
>W2010369052
CAESCM010000002
Bacteroidota
Pedobacter sp. Marseille-Q2390 [CAESCM]
505364
505435
+
Gln
TTG
[ENA]
¡û
>W2010534346
JAAOYY010000002
Bacteroidota
Pedobacter sp. SG908 [JAAOYY]
1176878
1176949
+
Gln
TTG
[ENA]
¡û
>W2010609562
JABMKV010000002
Bacteroidota
Pedobacter boryungensis LMG 31300 [JABMKV]
881422
881493
+
Gln
TTG
[ENA]
¡û
>W2010613549
JABSNU010000003
Bacteroidota
Pedobacter sp. LMG 31463 [JABSNU]
670405
670476
+
Gln
TTG
[ENA]
¡û
>W2010696209
JACHCQ010000023
Bacteroidota
Pedobacter sp. AK013 [JACHCQ]
110001
110072
+
Gln
TTG
[ENA]
¡û
>W2010696489
JACHCW010000005
Bacteroidota
Pedobacter sp. AK017 [JACHCW]
234612
234683
+
Gln
TTG
[ENA]
¡û
>W2010725549
JACIEF010000003
Bacteroidota
Pedobacter zeae DSM 100774 [JACIEF]
135428
135357
-
Gln
TTG
[ENA]
¡û
>W2010802095
LZZP01000005
Bacteroidota
Sphingobacterium sp. UME9 [LZZP]
44069
44140
+
Gln
TTG
[ENA]
¡û
>W2010805656
MCAQ01000005
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
139820
139749
-
Gln
TTG
[ENA]
¡û
>W2011192959
PHGU01000008
Bacteroidota
Sphingobacterium multivorum wB15 [PHGU]
43941
44012
+
Gln
TTG
[ENA]
¡û
>W2011235650
QAJQ01000021
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
44444
44515
+
Gln
TTG
[ENA]
¡û
>W2011354827
RAPY01000003
Bacteroidota
Sphingobacterium detergens CECT 7938 [RAPY]
43966
44037
+
Gln
TTG
[ENA]
¡û
>W2011392520
RCCK01000015
Bacteroidota
Pedobacter alluvionis DSM 19624 [RCCK]
302157
302228
+
Gln
TTG
[ENA]
¡û
>W2011412641
REFF01000015
Bacteroidota
Pedobacter sp. CF523 [REFF]
67637
67566
-
Gln
TTG
[ENA]
¡û
>W2011529294
SAYW01000004
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [SAYW]
516888
516959
+
Gln
TTG
[ENA]
¡û
>W2011602954
SIXF01000001
Bacteroidota
Pedobacter kyonggii K-4-11-1 [SIXF]
63303
63232
-
Gln
TTG
[ENA]
¡û
>W2011612521
SJSK01000006
Bacteroidota
Pedobacter sp. RP-1-13 [SJSK]
181546
181617
+
Gln
TTG
[ENA]
¡û
>W2011612715
SJSO01000043
Bacteroidota
Pedobacter sp. RP-3-21 [SJSO]
6971
7042
+
Gln
TTG
[ENA]
¡û
>W2011625153
SLYU01000007
Bacteroidota
Pedobacter sp. CF074 [SLYU]
254325
254396
+
Gln
TTG
[ENA]
¡û
>W2011652843
SOAB01000001
Bacteroidota
Pedobacter sp. OK701 [SOAB]
134202
134131
-
Gln
TTG
[ENA]
¡û
>W2011652880
SOAB01000012
Bacteroidota
Pedobacter sp. OK701 [SOAB]
2185
2114
-
Gln
TTG
[ENA]
¡û
>W2011663496
SOPX01000005
Bacteroidota
Pedobacter alluvionis DSM 19624 [SOPX]
301907
301978
+
Gln
TTG
[ENA]
¡û
>W2011666220
SOSG01000001
Bacteroidota
Pedobacter borealis 19a [SOSG]
3285344
3285273
-
Gln
TTG
[ENA]
¡û
>W2011763379
UAUU01000009
Bacteroidota
Sphingobacterium multivorum NCTC11343 [UAUU]
45940
46011
+
Gln
TTG
[ENA]
¡û
>W2011840097
UGYX01000002
Bacteroidota
Sphingobacterium multivorum NCTC11034 [UGYX]
1071562
1071491
-
Gln
TTG
[ENA]
¡û
>W2012047616
VIVW01000014
Bacteroidota
Pedobacter terrae 518 [VIVW]
27753
27682
-
Gln
TTG
[ENA]
¡û
>W2012081780
VLKR01000024
Bacteroidota
Sphingobacterium siyangense CGMCC 1.6855 [VLKR]
51722
51651
-
Gln
TTG
[ENA]
¡û
>W2110025961
BMHZ01000003
Bacteroidota
Pedobacter zeae CGMCC 1.15287 [BMHZ]
135372
135301
-
Gln
TTG
[ENA]
¡û
>W2110304335
JADCNK010000012
Bacteroidota
Pedobacter sp. MR2016-19 [JADCNK]
64973
64902
-
Gln
TTG
[ENA]
¡û
>W2110314592
JADFBX010000002
Bacteroidota
Pedobacter sp. MC2016-24 [JADFBX]
495266
495337
+
Gln
TTG
[ENA]
¡û
>W2110425132
JAELTN010000010
Bacteroidota
Pedobacter sp. ASV28 [JAELTN]
41397
41326
-
Gln
TTG
[ENA]
¡û
>W2110425572
JAELTV010000070
Bacteroidota
Pedobacter sp. ASV19 [JAELTV]
17573
17644
+
Gln
TTG
[ENA]
¡û
>W2110425596
JAELTV010000336
Bacteroidota
Pedobacter sp. ASV19 [JAELTV]
4734
4805
+
Gln
TTG
[ENA]
¡û
>W2110425918
JAELUC010000007
Bacteroidota
Pedobacter sp. ASV12 [JAELUC]
74120
74191
+
Gln
TTG
[ENA]
¡û
>W2110520823
JAFVME010000010
Bacteroidota
Pedobacter sp. B4-66 [JAFVME]
415101
415030
-
Gln
TTG
[ENA]
¡û
>W2110543717
JAGGPU010000002
Bacteroidota
Pedobacter sp. ISL-64 [JAGGPU]
302879
302950
+
Gln
TTG
[ENA]
¡û
>W2110543760
JAGGPV010000004
Bacteroidota
Pedobacter sp. ISL-68 [JAGGPV]
302880
302951
+
Gln
TTG
[ENA]
¡û
>W2110662525
JAHXYR010000003
Bacteroidota
Sphingobacterium sp. GVS05A [JAHXYR]
670691
670620
-
Gln
TTG
[ENA]
¡û
>C211137893
CP060723
Bacteroidota
Pedobacter roseus KACC 11594 [CP060723]
6202657
6202728
+
Gln
TTG
-
¡û
>C211143628
CP061171
Bacteroidota
Pedobacter sp. SW-16 [CP061171]
5690362
5690433
+
Gln
TTG
-
¡û
>C211195920
CP064939
Bacteroidota
Pedobacter sp. JBR3-12 [CP064939]
2447836
2447765
-
Gln
TTG
-
¡û
>C211241359
CP068086
Bacteroidota
Sphingobacterium multivorum FDAARGOS_1143 [CP068086]
3097416
3097487
+
Gln
TTG
-
¡û
>C211241484
CP068089
Bacteroidota
Sphingobacterium multivorum FDAARGOS_1140 [CP068089]
2656401
2656330
-
Gln
TTG
-
¡û
>C211245227
CP068223
Bacteroidota
Sphingobacterium multivorum FDAARGOS_1142 [CP068223]
5379735
5379806
+
Gln
TTG
-
¡û
>C211274938
CP070350
Bacteroidota
Sphingobacterium siyangense PDNC006 [CP070350]
1544643
1544572
-
Gln
TTG
-
¡û
>C211274939
CP070350
Bacteroidota
Sphingobacterium siyangense PDNC006 [CP070350]
1542962
1542891
-
Gln
TTG
-
¡û
>C211365564
CP079104
Bacteroidota
Sphingobacterium sp. E70 [CP079104]
3567568
3567497
-
Gln
TTG
-
¡û
>C211367422
CP079218
Bacteroidota
Pedobacter sp. D749 [CP079218]
5713489
5713560
+
Gln
TTG
-
¡û
>C212000090
CP068223
Bacteroidota
Sphingobacterium multivorum FDAARGOS_1142 [CP068223]
5379977
5380048
+
Gln
TTG
-
¡û
>C212000091
CP068224
Bacteroidota
Sphingobacterium multivorum FDAARGOS_1141 [CP068224]
262887
262816
-
Gln
TTG
-
¡û
>C231167164
CP080574
Bacteroidota
Sphingobacterium siyangense FTD2 [CP080574]
5694069
5694140
+
Gln
TTG
-
¡û
>C231619907
CP119313
Bacteroidota
Pedobacter sp. [CP119313]
351909
351980
+
Gln
TTG
-
¡û
>C231627247
CP120231
Bacteroidota
Sphingobacterium sp. [CP120231]
2703948
2703877
-
Gln
TTG
-
¡û
>C232000058
CP080574
Bacteroidota
Sphingobacterium siyangense FTD2 [CP080574]
5694311
5694382
+
Gln
TTG
-
¡û
>C232000276
CP120231
Bacteroidota
Sphingobacterium sp. [CP120231]
2703706
2703635
-
Gln
TTG
-
¡û
>C241063048
CP042171
Bacteroidota
Pedobacter sp. KBS0701 [CP042171]
6205660
6205731
+
Gln
TTG
-
¡û
>C241138183
CP049868
Bacteroidota
Pedobacter sp. HDW13 [CP049868]
3009922
3009993
+
Gln
TTG
-
¡û
>W1511390974
JSYN01000025
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
92658
92731
+
Gln
TTG
[ENA]
¡û
>W1511646563
LECU01000004
Bacteroidota
Pedobacter sp. BMA [LECU]
611601
611528
-
Gln
TTG
[ENA]
¡û
>W121063675
AJLG01000108
Bacteroidota
Pedobacter agri PB92 [AJLG]
11531
11458
-
Gln
TTG
[ENA]
¡û
>W1610612125
LGEL01000044
Bacteroidota
Pedobacter panaciterrae [LGEL]
14901
14828
-
Gln
TTG
[ENA]
¡û
>W1610716487
LLWP01000001
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
736760
736687
-
Gln
TTG
[ENA]
¡û
>W1610732762
LMKM01000012
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
143692
143619
-
Gln
TTG
[ENA]
¡û
>W1610733636
LMLE01000013
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
18048
18121
+
Gln
TTG
[ENA]
¡û
>W1610748682
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
150936
150863
-
Gln
TTG
[ENA]
¡û
>W1710512306
FMZH01000016
Bacteroidota
Pedobacter soli [FMZH]
3418
3345
-
Gln
TTG
[ENA]
¡û
>W1710516081
FNCH01000035
Bacteroidota
Pedobacter terrae [FNCH]
25423
25350
-
Gln
TTG
[ENA]
¡û
>W1710551691
FOGG01000045
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
3475
3548
+
Gln
TTG
[ENA]
¡û
>W1710555475
FOJM01000016
Bacteroidota
Pedobacter suwonensis [FOJM]
171811
171884
+
Gln
TTG
[ENA]
¡û
>W1710563364
FOPP01000011
Bacteroidota
Pedobacter insulae [FOPP]
120243
120316
+
Gln
TTG
[ENA]
¡û
>W1710733631
LGEL01000044
Bacteroidota
Pedobacter panaciterrae [LGEL]
14901
14828
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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