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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449052 (23 seq.)
>W1710857342
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
1511821
1511894
+
Cys
GCA
[ENA]
¡û
>W1710912687
LNRV01000005
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
141420
141493
+
Cys
GCA
[ENA]
¡û
>W1710912742
LNRW01000007
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
85187
85114
-
Cys
GCA
[ENA]
¡û
>W1710912787
LNRX01000006
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
141320
141393
+
Cys
GCA
[ENA]
¡û
>W141230390
BASZ01000005
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
164961
165034
+
Cys
GCA
[ENA]
¡û
>WENV170012993
ASRQ01003371
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
479
406
-
Cys
GCA
[ENA]
¡û
>WENV170013053
ASRR01001153
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1325
1398
+
Cys
GCA
[ENA]
¡û
>C181062146
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
3231092
3231165
+
Cys
GCA
-
¡û
>C191000333
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
53200
53273
+
Cys
GCA
-
¡û
>C191121062
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2586400
2586473
+
Cys
GCA
-
¡û
>W1911493255
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1210637
1210564
-
Cys
GCA
[ENA]
¡û
>W1911701564
QNUM01000003
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
5994
5921
-
Cys
GCA
[ENA]
¡û
>W1810196351
PKUQ01000016
Alphaproteobacteria
Cohaesibacter celericrescens H1304 [PKUQ]
519762
519835
+
Cys
GCA
[ENA]
¡û
>W1810725549
QODK01000002
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
9744
9671
-
Cys
GCA
[ENA]
¡û
>W2010308776
CABWKY010000005
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
363049
362976
-
Cys
GCA
[ENA]
¡û
>W2010526906
JAANYY010000003
Alphaproteobacteria
Sphingopyxis sp. Z10-6 [JAANYY]
569941
569868
-
Cys
GCA
[ENA]
¡û
>W2011154206
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
1210637
1210564
-
Cys
GCA
[ENA]
¡û
>W2011278104
QNUM01000003
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
5994
5921
-
Cys
GCA
[ENA]
¡û
>W2011961920
VANT01000001
Alphaproteobacteria
Cohaesibacter sp. CAU 1516 [VANT]
1334671
1334744
+
Cys
GCA
[ENA]
¡û
>C211295940
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
919359
919286
-
Cys
GCA
-
¡û
>C231032186
CP022707
Alphaproteobacteria
Novosphingobium sp. 9 [CP022707, CP022708]
2900359
2900432
+
Cys
GCA
-
¡û
>C241148348
CP051131
Alphaproteobacteria
Parasphingopyxis algicola JCM 31719 [CP051131]
500467
500394
-
Cys
GCA
-
¡û
>W1710571156
FOVR01000008
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
170117
170190
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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