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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450789 (35 seq.)
>W1710925692
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
605335
605262
-
Thr
TGT
[ENA]
¡û
>C007469
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
855858
855931
+
Thr
TGT
[Ensembl]
¡û
>WENV180283994
OBID01009444
[OBID] metagenome; sludge
817
890
+
Thr
TGT
[ENA]
¡û
>WENV181375831
OFQZ01004360
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
2642
2715
+
Thr
TGT
[ENA]
¡û
>WENV181380825
OFRE01008774
[OFRE] wastewater metagenome; Exp Tend NO 50WW
1705
1778
+
Thr
TGT
[ENA]
¡û
>WENV181389705
OFRO01002160
[OFRO] wastewater metagenome; Exp Tend NO 10WW
1778
1705
-
Thr
TGT
[ENA]
¡û
>WENV181841332
OGVR01010835
[OGVR] freshwater metagenome; freshwater
258
331
+
Thr
TGT
[ENA]
¡û
>W141277648
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
151102
151029
-
Thr
TGT
[ENA]
¡û
>WENV170009814
APMI01003378
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
74
+
Thr
TGT
[ENA]
¡û
>WENV170010247
APMI01011432
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2097
2170
+
Thr
TGT
[ENA]
¡û
>WENV170011250
APMI01052287
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
74
+
Thr
TGT
[ENA]
¡û
>WENV170011329
APMI01056497
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4286
4359
+
Thr
TGT
[ENA]
¡û
>WENV170011886
APMI01099623
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
161
234
+
Thr
TGT
[ENA]
¡û
>W09100909
AADF01000011
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
14437
14364
-
Thr
TGT
[ENA]
¡û
>C191081649
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
751099
751172
+
Thr
TGT
-
¡û
>SRA1001977
SRR001308.160643
Metagenomic characterization of a wastewater treatment plant (SRP000180)
82
9
-
Thr
TGT
[SRA]
>W2011692269
SSSQ01000009
Betaproteobacteria
Dechloromonas hortensis MA-1 [SSSQ]
37225
37152
-
Thr
TGT
[ENA]
¡û
>W2011692300
SSSR01000002
Betaproteobacteria
Propionivibrio limicola GolChi1 [SSSR]
218938
219011
+
Thr
TGT
[ENA]
¡û
>W2011693821
SSXW01000002
Betaproteobacteria
Dechloromonas sp. Dech2017 [SSXW]
48126
48053
-
Thr
TGT
[ENA]
¡û
>W2011693870
SSXX01000001
Betaproteobacteria
Dechloromonas sp. H13 [SSXX]
433800
433727
-
Thr
TGT
[ENA]
¡û
>ENV09001068
ABSQ01025093
Freshwater sediment metagenome lwMethenol_C1
774
701
-
Thr
TGT
[ENA]
¡û
>W2110587570
JAHBAH010000001
Betaproteobacteria
Quatrionicoccus australiensis 100 [JAHBAH]
2993187
2993260
+
Thr
TGT
[ENA]
¡û
>C211062928
CP045202
Betaproteobacteria
Dechloromonas sp. TW-R-39-2 [CP045202]
2970794
2970721
-
Thr
TGT
-
¡û
>C231139773
CP075185
Betaproteobacteria
Dechloromonas denitrificans 110 [CP075185]
1001064
1001137
+
Thr
TGT
-
¡û
>C231139835
CP075186
Betaproteobacteria
Dechloromonas denitrificans G6 [CP075186]
1078180
1078253
+
Thr
TGT
-
¡û
>C231139927
CP075187
Betaproteobacteria
Dechloromonas denitrificans 98 [CP075187]
2579118
2579045
-
Thr
TGT
-
¡û
>C231139960
CP075188
Betaproteobacteria
Quatrionicoccus australiensis D9 [CP075188]
935145
935218
+
Thr
TGT
-
¡û
>C231140023
CP075189
Betaproteobacteria
Ferribacterium limneticum 77 [CP075189]
859261
859334
+
Thr
TGT
-
¡û
>C231140082
CP075190
Betaproteobacteria
Ferribacterium limneticum 76 [CP075190]
944683
944756
+
Thr
TGT
-
¡û
>C231140162
CP075191
Betaproteobacteria
Ferribacterium limneticum 128 [CP075191]
3206253
3206180
-
Thr
TGT
-
¡û
>C231140224
CP075192
Betaproteobacteria
Ferribacterium limneticum 132 [CP075192]
3206398
3206325
-
Thr
TGT
-
¡û
>C231454352
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
1567979
1568052
+
Thr
TGT
-
¡û
>W1610506454
FLQY01000050
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
8249
8176
-
Thr
TGT
[ENA]
¡û
>W1610783338
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
605335
605262
-
Thr
TGT
[ENA]
¡û
>W1710498957
FLQY01000050
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
8249
8176
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK