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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45088 (64 seq.)
>W1710926779
LOEL01000078
Bacteroidota
Porphyromonas gingivalis [LOEL]
66410
66325
-
Ser
TGA
[ENA]
¡û
>W1711110214
LTVI01000034
Bacteroidota
Prevotella sp. HMSC073D09 [LTVI]
40580
40493
-
Ser
TGA
[ENA]
¡û
>W1711388641
MEHX01000029
Bacteroidota
Tannerella forsythia [MEHX]
12089
12002
-
Ser
TGA
[ENA]
¡û
>W1712084856
NHRU01000001
Bacteroidota
Porphyromonas gingivalis [NHRU]
77976
77891
-
Ser
TGA
[ENA]
¡û
>WENV180003130
FLNY01004995
[FLNY] bioreactor metagenome; Moose rumen
53881
53966
+
Ser
TGA
[ENA]
¢þ
>WENV180011139
FLSI01201707
[FLSI] metagenome; saliva
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV180721852
ODGL01019121
[ODGL] human metagenome; G_DNA_Subgingival plaque
166
251
+
Ser
TGA
[ENA]
¢þ
>WENV180797214
ODJB01036723
[ODJB] human metagenome; G_DNA_Supragingival plaque
112
27
-
Ser
TGA
[ENA]
¢þ
>WENV180808781
ODJK01001055
[ODJK] human metagenome; G_DNA_Subgingival plaque
10163
10078
-
Ser
TGA
[ENA]
¢þ
>WENV180950843
ODUH01002949
[ODUH] human metagenome; G_DNA_Subgingival plaque
4084
3999
-
Ser
TGA
[ENA]
¢þ
>WENV180973623
ODUW01010055
[ODUW] human metagenome; G_DNA_Supragingival plaque
538
623
+
Ser
TGA
[ENA]
¢þ
>WENV181075016
OEAO01054498
[OEAO] human metagenome; G_DNA_Tongue dorsum
365
450
+
Ser
TGA
[ENA]
¢þ
>WENV181090437
OEBC01000454
[OEBC] human metagenome; G_DNA_Supragingival plaque
1126
1041
-
Ser
TGA
[ENA]
¢þ
>WENV181152787
OEIA01006277
[OEIA] human metagenome; G_DNA_Supragingival plaque
1786
1701
-
Ser
TGA
[ENA]
¢þ
>WENV181333193
OFMA01050707
[OFMA] human gut metagenome; human gut
173
258
+
Ser
TGA
[ENA]
¢þ
>W141145617
AWUU01000004
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
146
231
+
Ser
TGA
[ENA]
¡û
>W141145693
AWUV01000150
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
9240
9155
-
Ser
TGA
[ENA]
¡û
>W141145700
AWUW01000018
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
144
231
+
Ser
TGA
[ENA]
¡û
>W141145940
AWVC01000011
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
32086
31999
-
Ser
TGA
[ENA]
¡û
>W141145978
AWVD01000034
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
1746
1661
-
Ser
TGA
[ENA]
¡û
>W141146026
AWVE01000027
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
146
233
+
Ser
TGA
[ENA]
¡û
>WENV182005914
OHBE01030732
[OHBE] human gut metagenome; faeces
167
252
+
Ser
TGA
[ENA]
¢þ
>WENV182326360
OHYU01016350
[OHYU] human gut metagenome; feces
101
14
-
Ser
TGA
[ENA]
¢þ
>WENV183507977
OMHA01000113
[OMHA] human oral metagenome; human oral
171
256
+
Ser
TGA
[ENA]
¢þ
>WENV183659322
OQWM01019507
[OQWM] human gut metagenome; human gut
88
3
-
Ser
TGA
[ENA]
¢þ
>WENV170969840
MTKW01041431
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3010
3095
+
Ser
TGA
[ENA]
¢þ
>C181102106
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
502198
502113
-
Ser
TGA
-
¡û
>C181102121
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
945196
945281
+
Ser
TGA
-
¡û
>C181102266
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
780134
780219
+
Ser
TGA
-
¡û
>C181102356
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
66276
66191
-
Ser
TGA
-
¡û
>C181102503
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
71942
71857
-
Ser
TGA
-
¡û
>C181102521
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1252413
1252498
+
Ser
TGA
-
¡û
>C181123582
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
627100
627185
+
Ser
TGA
-
¡û
>C181123632
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
614451
614536
+
Ser
TGA
-
¡û
>W1910217546
FMML01000041
Bacteroidota
Tannerella forsythia UB22 [FMML]
19890
19975
+
Ser
TGA
[ENA]
¡û
>W1910217586
FMMM01000041
Bacteroidota
Tannerella forsythia UB20 [FMMM]
19387
19472
+
Ser
TGA
[ENA]
¡û
>W1910217624
FMMN01000039
Bacteroidota
Tannerella forsythia UB4 [FMMN]
75698
75783
+
Ser
TGA
[ENA]
¡û
>W1910371000
FUFB01000001
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
315
400
+
Ser
TGA
[ENA]
¡û
>W1910371044
FUFC01000002
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
16154
16069
-
Ser
TGA
[ENA]
¡û
>W1910371120
FUFD01000054
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
1075
1160
+
Ser
TGA
[ENA]
¡û
>W1910371144
FUFE01000040
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
10161
10076
-
Ser
TGA
[ENA]
¡û
>W1910371172
FUFF01000001
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
52532
52447
-
Ser
TGA
[ENA]
¡û
>W1910371238
FUFG01000034
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
29100
29015
-
Ser
TGA
[ENA]
¡û
>W1910372614
FUGG01000042
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
167
252
+
Ser
TGA
[ENA]
¡û
>W1911247278
NSLJ01000003
Bacteroidota
Tannerella forsythia WW11663 [NSLJ]
6400
6315
-
Ser
TGA
[ENA]
¡û
>W1911247323
NSLK01000003
Bacteroidota
Tannerella forsythia WW10960 [NSLK]
183002
182917
-
Ser
TGA
[ENA]
¡û
>W1911247423
NSLM01000012
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
32656
32571
-
Ser
TGA
[ENA]
¡û
>W1911247525
NSLO01000065
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
1290
1205
-
Ser
TGA
[ENA]
¡û
>W1911247568
NSLP01000068
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
1405
1320
-
Ser
TGA
[ENA]
¡û
>W1911247586
NSLQ01000008
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
32761
32676
-
Ser
TGA
[ENA]
¡û
>W1911247684
NSLS01000014
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
26500
26585
+
Ser
TGA
[ENA]
¡û
>W1911247738
NSLT01000050
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
1069
1154
+
Ser
TGA
[ENA]
¡û
>W1911247830
NSLW01000001
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
92864
92949
+
Ser
TGA
[ENA]
¡û
>W1911247910
NSLX01000054
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
243
328
+
Ser
TGA
[ENA]
¡û
>C11117308
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
2014854
2014941
+
Ser
TGA
[Ensembl]
¡û
>W1511430522
JUET01000075
Bacteroidota
Tannerella forsythia ATCC 43037 [JUET]
19339
19424
+
Ser
TGA
[ENA]
¡û
>C121007774
CP003191
Bacteroidota
Tannerella forsythia 92A2 [CP003191]
1448188
1448275
+
Ser
TGA
[Ensembl]
¡û
>C161000152
AP013044
Bacteroidota
Tannerella forsythia 3313 [AP013044]
1385185
1385272
+
Ser
TGA
-
¡û
>C161000220
AP013045
Bacteroidota
Tannerella forsythia KS16 [AP013045]
1012246
1012159
-
Ser
TGA
[Ensembl]
¡û
>C161051794
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1240301
1240216
-
Ser
TGA
-
¡û
>W1610784272
LOEL01000078
Bacteroidota
Porphyromonas gingivalis [LOEL]
66410
66325
-
Ser
TGA
[ENA]
¡û
>W1710017872
ASYM01000021
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
168
253
+
Ser
TGA
[ENA]
¡û
>W1710017964
ASYO01000063
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
107
192
+
Ser
TGA
[ENA]
¡û
>W1710018018
ASYP01000089
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
8723
8808
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK