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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45127 (130 seq.)
>W1710859989
LMCN01000004
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
155071
155158
+
Ser
CGA
[ENA]
¡û
>W1710861268
LMDM01000005
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
156827
156914
+
Ser
CGA
[ENA]
¡û
>W1710866413
LMHL01000008
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
108336
108423
+
Ser
CGA
[ENA]
¡û
>W1710867329
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
235966
236053
+
Ser
CGA
[ENA]
¡û
>W1710873429
LMMT01000039
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
463529
463616
+
Ser
CGA
[ENA]
¡û
>W1710873764
LMNA01000030
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
651464
651377
-
Ser
CGA
[ENA]
¡û
>W1710893427
LNET01000055
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
152471
152384
-
Ser
CGA
[ENA]
¡û
>W1710893613
LNEY01000008
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
67446
67533
+
Ser
CGA
[ENA]
¡û
>W1710925690
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
283439
283526
+
Ser
CGA
[ENA]
¡û
>W1711395001
MESQ01000034
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
14409
14496
+
Ser
CGA
[ENA]
¡û
>W1711413737
MGWS01000032
Betaproteobacteria
Gallionellales bacterium GWA2_60_18 [MGWS]
52563
52650
+
Ser
CGA
[ENA]
¡û
>W1711421877
MIAF01000468
Betaproteobacteria
Sideroxydans sp. RIFOXYD2_FULL_59_7 [MIAF]
2221
2134
-
Ser
CGA
[ENA]
¡û
>W1711583991
MNXX01000088
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
15623
15710
+
Ser
CGA
[ENA]
¡û
>W1711709074
MSYM01000018
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
385292
385379
+
Ser
CGA
[ENA]
¡û
>W1711721708
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
3610223
3610310
+
Ser
CGA
[ENA]
¡û
>W1711751214
MUNO01000022
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
156537
156450
-
Ser
CGA
[ENA]
¡û
>C171049805
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
733255
733168
-
Ser
CGA
-
¡û
>C171085187
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2678259
2678172
-
Ser
CGA
-
¡û
>C171091730
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
2827499
2827586
+
Ser
CGA
-
¡û
>C017330
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
977497
977584
+
Ser
CGA
[Ensembl]
¡û
>WENV180015933
FSTR01000009
[FSTR] metagenome; soil
3557
3470
-
Ser
CGA
[ENA]
¢þ
>WENV180016275
FSUO01000167
[FSUO] metagenome; soil
3563
3476
-
Ser
CGA
[ENA]
¢þ
>WENV180016395
FSUW01000017
[FSUW] metagenome; soil
4887
4800
-
Ser
CGA
[ENA]
¢þ
>WENV180016494
FSVG01000791
[FSVG] metagenome; soil
6
93
+
Ser
CGA
[ENA]
¢þ
>WENV180016509
FSVG01001206
[FSVG] metagenome; soil
86
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180016924
FSWB01000352
[FSWB] metagenome; soil
7
94
+
Ser
CGA
[ENA]
¢þ
>WENV180017750
FSXQ01001065
[FSXQ] metagenome; soil
7676
7589
-
Ser
CGA
[ENA]
¢þ
>WENV180019712
FTCK01000070
[FTCK] metagenome; soil
10
97
+
Ser
CGA
[ENA]
¢þ
>WENV180019714
FTCK01000096
[FTCK] metagenome; soil
11
98
+
Ser
CGA
[ENA]
¢þ
>WENV180020378
FTCZ01002274
[FTCZ] metagenome; soil
12
99
+
Ser
CGA
[ENA]
¢þ
>WENV180020879
FTDG01000655
[FTDG] metagenome; soil
2919
3005
+
Ser
CGA
[ENA]
¢þ
>WENV180022078
FTFO01000118
[FTFO] metagenome; soil
87
1
-
Ser
CGA
[ENA]
¢þ
>WENV180023905
FTIF01003686
[FTIF] metagenome; soil
1
88
+
Ser
CGA
[ENA]
¢þ
>WENV180024045
FTIF01014565
[FTIF] metagenome; soil
6091
6178
+
Ser
CGA
[ENA]
¢þ
>WENV180024085
FTIF01032438
[FTIF] metagenome; soil
6
93
+
Ser
CGA
[ENA]
¢þ
>WENV180024091
FTIF01034051
[FTIF] metagenome; soil
14126
14039
-
Ser
CGA
[ENA]
¢þ
>WENV180024192
FTIF01177133
[FTIF] metagenome; soil
93
6
-
Ser
CGA
[ENA]
¢þ
>WENV180024196
FTIF01197033
[FTIF] metagenome; soil
129
42
-
Ser
CGA
[ENA]
¢þ
>WENV180025360
FTIP01000283
[FTIP] metagenome; soil
5195
5108
-
Ser
CGA
[ENA]
¢þ
>WENV180025456
FTIP01006606
[FTIP] metagenome; soil
1029
942
-
Ser
CGA
[ENA]
¢þ
>WENV180025486
FTIP01017759
[FTIP] metagenome; soil
55
142
+
Ser
CGA
[ENA]
¢þ
>WENV180025527
FTIP01036633
[FTIP] metagenome; soil
1253
1166
-
Ser
CGA
[ENA]
¢þ
>WENV180025542
FTIP01046599
[FTIP] metagenome; soil
103
190
+
Ser
CGA
[ENA]
¢þ
>WENV180025557
FTIP01058346
[FTIP] metagenome; soil
71
158
+
Ser
CGA
[ENA]
¢þ
>WENV180025560
FTIP01062099
[FTIP] metagenome; soil
55
142
+
Ser
CGA
[ENA]
¢þ
>WENV180025601
FTIP01105562
[FTIP] metagenome; soil
1040
953
-
Ser
CGA
[ENA]
¢þ
>WENV180025679
FTIP01321146
[FTIP] metagenome; soil
2513
2426
-
Ser
CGA
[ENA]
¢þ
>WENV180026021
FTIR01002555
[FTIR] metagenome; soil
14591
14504
-
Ser
CGA
[ENA]
¢þ
>WENV180026032
FTIR01002917
[FTIR] metagenome; soil
1917
1830
-
Ser
CGA
[ENA]
¢þ
>WENV180026049
FTIR01008498
[FTIR] metagenome; soil
9744
9657
-
Ser
CGA
[ENA]
¢þ
>WENV180026082
FTIR01030384
[FTIR] metagenome; soil
1
88
+
Ser
CGA
[ENA]
¢þ
>WENV180026213
FTIR01392054
[FTIR] metagenome; soil
8468
8381
-
Ser
CGA
[ENA]
¢þ
>WENV180030575
FTJN01000311
[FTJN] metagenome; soil
17760
17673
-
Ser
CGA
[ENA]
¢þ
>WENV180032722
FTKD01000125
[FTKD] metagenome; soil
57439
57526
+
Ser
CGA
[ENA]
¢þ
>WENV180032728
FTKD01000141
[FTKD] metagenome; soil
179
266
+
Ser
CGA
[ENA]
¢þ
>WENV180032928
FTKD01009759
[FTKD] metagenome; soil
84
171
+
Ser
CGA
[ENA]
¢þ
>WENV180035042
FTKT01000355
[FTKT] metagenome; soil
6090
6003
-
Ser
CGA
[ENA]
¢þ
>WENV180035198
FTKT01005402
[FTKT] metagenome; soil
9
96
+
Ser
CGA
[ENA]
¢þ
>WENV180283667
OBID01001529
[OBID] metagenome; sludge
7009
7096
+
Ser
CGA
[ENA]
¢þ
>WENV180285065
OBID01213082
[OBID] metagenome; sludge
281
368
+
Ser
CGA
[ENA]
¢þ
>WENV181172381
OEIV010642572
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
55
142
+
Ser
CGA
[ENA]
¢þ
>WENV181188946
OEOE01507222
[OEOE] activated sludge metagenome; Activated Sludge
173
86
-
Ser
CGA
[ENA]
¢þ
>WENV181189982
OEOF01368660
[OEOF] activated sludge metagenome; Activated Sludge
172
85
-
Ser
CGA
[ENA]
¢þ
>WENV181227614
OFDN01022358
[OFDN] hot springs metagenome; Water
87
1
-
Ser
CGA
[ENA]
¢þ
>WENV181365397
OFPQ01000257
[OFPQ] sediment metagenome; Lake sediment
2161
2074
-
Ser
CGA
[ENA]
¢þ
>WENV181365458
OFPR01000556
[OFPR] sediment metagenome; Lake sediment
1429
1342
-
Ser
CGA
[ENA]
¢þ
>WENV181375812
OFQZ01003956
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
2751
2838
+
Ser
CGA
[ENA]
¢þ
>WENV181380977
OFRE01017339
[OFRE] wastewater metagenome; Exp Tend NO 50WW
725
812
+
Ser
CGA
[ENA]
¢þ
>WENV181390145
OFRO01022528
[OFRO] wastewater metagenome; Exp Tend NO 10WW
541
454
-
Ser
CGA
[ENA]
¢þ
>WENV181399040
OFSE01007748
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1921
1834
-
Ser
CGA
[ENA]
¢þ
>WENV181731565
OGQD01001444
[OGQD] human gut metagenome; faeces
2624
2537
-
Ser
CGA
[ENA]
¢þ
>C08007644
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
977497
977584
+
Ser
CGA
[Ensembl]
¡û
>W141266009
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
1010547
1010460
-
Ser
CGA
[ENA]
¡û
>WENV183663038
ORJL010248840
[ORJL] groundwater metagenome; groundwater
370
457
+
Ser
CGA
[ENA]
¢þ
>WENV183697452
OUNJ010963417
[OUNJ] metagenome; soil
7841
7754
-
Ser
CGA
[ENA]
¢þ
>WENV170010391
APMI01015611
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1886
1973
+
Ser
CGA
[ENA]
¢þ
>WENV170011882
APMI01099014
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2
89
+
Ser
CGA
[ENA]
¢þ
>WENV170012251
APMI01142758
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
95
8
-
Ser
CGA
[ENA]
¢þ
>WENV170559084
CXWL01109624
[CXWL] groundwater metagenome; biofilm material
1822
1735
-
Ser
CGA
[ENA]
¢þ
>WENV170576920
FRDC01002256
[FRDC] freshwater metagenome; water
26456
26369
-
Ser
CGA
[ENA]
¢þ
>WENV170600192
FUWD010113275
[FUWD] metagenome; unknown
478
565
+
Ser
CGA
[ENA]
¢þ
>WENV170602843
FUWD010269990
[FUWD] metagenome; unknown
684
771
+
Ser
CGA
[ENA]
¢þ
>WENV170625854
FUWD013207429
[FUWD] metagenome; unknown
1876
1789
-
Ser
CGA
[ENA]
¢þ
>WENV170634073
FUWD013409126
[FUWD] metagenome; unknown
1876
1789
-
Ser
CGA
[ENA]
¢þ
>WENV170639763
JFJP01007180
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6224
6311
+
Ser
CGA
[ENA]
¢þ
>WENV170639782
JFJP01007677
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
84
-1
-
Ser
CGA
[ENA]
¢þ
>WENV170639828
JFJP01009283
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4561
4647
+
Ser
CGA
[ENA]
¢þ
>WENV170706949
LNAP01009552
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1491
1404
-
Ser
CGA
[ENA]
¢þ
>WENV170708978
LNFM01000056
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29318
29405
+
Ser
CGA
[ENA]
¢þ
>WENV170709821
LNFM01000771
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20340
20253
-
Ser
CGA
[ENA]
¢þ
>WENV170710756
LNFM01002573
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
21980
22067
+
Ser
CGA
[ENA]
¢þ
>WENV170711901
LNFM01008195
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16651
16738
+
Ser
CGA
[ENA]
¢þ
>WENV170712000
LNFM01009054
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16099
16183
+
Ser
CGA
[ENA]
¢þ
>WENV170712502
LNFM01014135
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
89
+
Ser
CGA
[ENA]
¢þ
>WENV170713309
LNFM01028512
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
89
+
Ser
CGA
[ENA]
¢þ
>WENV170714078
LNFM01053089
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2711
2624
-
Ser
CGA
[ENA]
¢þ
>C181164196
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1755101
1755014
-
Ser
CGA
-
¡û
>W09101606
AAFQ02000002
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
74816
74729
-
Ser
CGA
[ENA]
¡û
>C191081654
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1162695
1162782
+
Ser
CGA
-
¡û
>W09104858
AANM01000004
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
8319
8406
+
Ser
CGA
[ENA]
¡û
>W141695473
JMDZ01000006
Betaproteobacteria
Polaromonas glacialis [JMDZ]
163255
163168
-
Ser
CGA
[ENA]
¡û
>W1910700256
MESI01000123
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
49127
49214
+
Ser
CGA
[ENA]
¡û
>W1910744119
MHZY01000245
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
8942
9029
+
Ser
CGA
[ENA]
¡û
>SRA1003061
SRR002326.176551
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
105
192
+
Ser
CGA
[SRA]
>SRA1003232
SRR002326.322742
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
1
88
+
Ser
CGA
[SRA]
>SRA1003267
SRR002326.353186
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
1
88
+
Ser
CGA
[SRA]
>SRA1003450
SRR002326.477613
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
98
-
Ser
CGA
[SRA]
>SRA1003706
SRR002327.135576
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
199
112
-
Ser
CGA
[SRA]
>SRA1003989
SRR002328.78347
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
253
166
-
Ser
CGA
[SRA]
>W1810577598
QEOJ01000002
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
656337
656250
-
Ser
CGA
[ENA]
¡û
>W1810679146
QKOE01000004
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
319034
319121
+
Ser
CGA
[ENA]
¡û
>W1810759431
QPJK01000002
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
75307
75220
-
Ser
CGA
[ENA]
¡û
>ENV09000876
ABSP01054919
Freshwater sediment metagenome lwMethane_C1
308
395
+
Ser
CGA
[ENA]
¡û
>W1511433155
JUGZ01000021
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
80320
80407
+
Ser
CGA
[ENA]
¡û
>W1511433206
JUHA01000013
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
54333
54246
-
Ser
CGA
[ENA]
¡û
>W1511705371
LGRD01000018
Betaproteobacteria
Methylibium sp. NZG [LGRD]
62594
62681
+
Ser
CGA
[ENA]
¡û
>W1610722335
LMCN01000004
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
155071
155158
+
Ser
CGA
[ENA]
¡û
>W1610723614
LMDM01000005
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
156827
156914
+
Ser
CGA
[ENA]
¡û
>W1610728759
LMHL01000008
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
108336
108423
+
Ser
CGA
[ENA]
¡û
>W1610729675
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
235966
236053
+
Ser
CGA
[ENA]
¡û
>W1610735775
LMMT01000039
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
463529
463616
+
Ser
CGA
[ENA]
¡û
>W1610736110
LMNA01000030
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
651464
651377
-
Ser
CGA
[ENA]
¡û
>W1610753693
LNET01000055
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
152471
152384
-
Ser
CGA
[ENA]
¡û
>W1610753879
LNEY01000008
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
67446
67533
+
Ser
CGA
[ENA]
¡û
>W1610783336
LODL01000021
Betaproteobacteria
Dechloromonas denitrificans [LODL]
283439
283526
+
Ser
CGA
[ENA]
¡û
>W1710523407
FNHX01000005
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
298055
298142
+
Ser
CGA
[ENA]
¡û
>W1710524828
FNJA01000008
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
237149
237062
-
Ser
CGA
[ENA]
¡û
>W1710539467
FNVJ01000019
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
36739
36652
-
Ser
CGA
[ENA]
¡û
>W1710578308
FPBM01000003
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
198940
198853
-
Ser
CGA
[ENA]
¡û
>W1710592674
FRCQ01000020
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
48537
48624
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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