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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451417 (66 seq.)
>W131180765
ARNJ01000061
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
113724
113795
+
Cys
GCA
[ENA]
¡û
>W131215962
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
1025175
1025248
+
Cys
GCA
[ENA]
¡û
>W1711377573
MDZA01000421
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
10272
10201
-
Cys
GCA
[ENA]
¡û
>W1711377580
MDZB01000062
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
38054
37983
-
Cys
GCA
[ENA]
¡û
>W1711377654
MDZC01000101
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
33345
33274
-
Cys
GCA
[ENA]
¡û
>W1712105590
NIRR01000040
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
7201
7274
+
Cys
GCA
[ENA]
¡û
>C181175111
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2337548
2337477
-
Cys
GCA
-
¡û
>C191154873
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1139886
1139957
+
Cys
GCA
-
¡û
>W141734718
JNLX01000127
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
60683
60612
-
Cys
GCA
[ENA]
¡û
>W1910651894
LYMU01000070
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
213646
213719
+
Cys
GCA
[ENA]
¡û
>W1911788147
QYCN01000006
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
44468
44397
-
Cys
GCA
[ENA]
¡û
>SRA1003878
SRR002328.3444
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
145
+
Cys
GCA
[SRA]
>W1810912390
QVLT01000020
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
22692
22763
+
Cys
GCA
[ENA]
¡û
>SRA1014509
SRR023845.172785
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
183
110
-
Cys
GCA
[SRA]
>C151009416
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3214639
3214712
+
Cys
GCA
[Ensembl]
¡û
>W2010575067
JAAVTK010000011
Bacteroidota
Hymenobacter sp. 1B [JAAVTK]
153759
153688
-
Cys
GCA
[ENA]
¡û
>W2010587638
JABBGH010000003
Bacteroidota
Hymenobacter sp. RP-2-7 [JABBGH]
824674
824603
-
Cys
GCA
[ENA]
¡û
>W2010605077
JABKAU010000036
Bacteroidota
Hymenobacter sp. P5342 [JABKAU]
47171
47100
-
Cys
GCA
[ENA]
¡û
>W2010605119
JABKAV010000027
Bacteroidota
Hymenobacter sp. P5252 [JABKAV]
37696
37767
+
Cys
GCA
[ENA]
¡û
>W2010613348
JABSNP010000007
Bacteroidota
Hymenobacter sp. 9A [JABSNP]
211832
211903
+
Cys
GCA
[ENA]
¡û
>W2010797129
LYMU01000070
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
213646
213719
+
Cys
GCA
[ENA]
¡û
>W2011340439
QYCN01000006
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
44468
44397
-
Cys
GCA
[ENA]
¡û
>W2011407393
RCYZ01000002
Bacteroidota
Hymenobacter nivis S9.2P [RCYZ]
638946
639017
+
Cys
GCA
[ENA]
¡û
>W2011677374
SRII01000002
Bacteroidota
Hymenobacter sp. UV11 [SRII]
34947
34874
-
Cys
GCA
[ENA]
¡û
>W2012093269
VMRJ01000002
Bacteroidota
Hymenobacter sp. Fur1 [VMRJ]
881363
881292
-
Cys
GCA
[ENA]
¡û
>W2012424775
WQKZ01000004
Bacteroidota
Hymenobacter sp. HMF4947 [WQKZ]
563822
563893
+
Cys
GCA
[ENA]
¡û
>W2110022763
BMFN01000001
Bacteroidota
Hymenobacter qilianensis CGMCC 1.12720 [BMFN]
103382
103311
-
Cys
GCA
[ENA]
¡û
>W2110250703
JACSCW010000002
Bacteroidota
Hymenobacter sp. BT188 [JACSCW]
855402
855473
+
Cys
GCA
[ENA]
¡û
>W2110250742
JACSCX010000001
Bacteroidota
Hymenobacter sp. BT190 [JACSCX]
124296
124225
-
Cys
GCA
[ENA]
¡û
>W2110250792
JACSCY010000009
Bacteroidota
Hymenobacter citatus BT507 [JACSCY]
15121
15192
+
Cys
GCA
[ENA]
¡û
>W2110283184
JACXAD010000046
Bacteroidota
Hymenobacter sp. BT664 [JACXAD]
220
149
-
Cys
GCA
[ENA]
¡û
>W2110372564
JADQDQ010000005
Bacteroidota
Hymenobacter jeongseonensis BT683 [JADQDQ]
81921
81850
-
Cys
GCA
[ENA]
¡û
>W2110427383
JAELXV010000003
Bacteroidota
Siccationidurans sp. BT559 [JAELXV]
895311
895240
-
Cys
GCA
[ENA]
¡û
>W2110512291
JAFLQZ010000007
Bacteroidota
Hymenobacter sp. BT186 [JAFLQZ]
128568
128639
+
Cys
GCA
[ENA]
¡û
>W2110523122
JAGEMO020000018
Bacteroidota
Hymenobacter sp. 3F2 [JAGEMO]
174999
174928
-
Cys
GCA
[ENA]
¡û
>W2110532032
JAGETX010000007
Bacteroidota
Hymenobacter defluvii BT507 [JAGETX]
13558
13629
+
Cys
GCA
[ENA]
¡û
>W2110532060
JAGETY010000002
Bacteroidota
Siccationidurans sp. BT559 [JAGETY]
435734
435805
+
Cys
GCA
[ENA]
¡û
>W2110543624
JAGGPS010000007
Bacteroidota
Hymenobacter sp. ISL-91 [JAGGPS]
20664
20735
+
Cys
GCA
[ENA]
¡û
>W2110606275
JAHHZN010000001
Bacteroidota
Hymenobacter sp. NST-14 [JAHHZN]
42662
42591
-
Cys
GCA
[ENA]
¡û
>W2110625940
JAHLZX020000001
Bacteroidota
Hymenobacter sp. PAMC29296 [JAHLZX]
4626132
4626203
+
Cys
GCA
[ENA]
¡û
>W2110625986
JAHLZY020000001
Bacteroidota
Hymenobacter sp. PAMC29294 [JAHLZY]
3330459
3330388
-
Cys
GCA
[ENA]
¡û
>W2110626020
JAHLZZ010000001
Bacteroidota
Hymenobacter sp. PAMC29290 [JAHLZZ]
2142231
2142302
+
Cys
GCA
[ENA]
¡û
>W2110657641
JAHWGL010000115
Bacteroidota
Hymenobacter profundi M2 [JAHWGL]
2968
2897
-
Cys
GCA
[ENA]
¡û
>W2110659024
JAHWXR010000007
Bacteroidota
Hymenobacter norwichensis KCTC 72338 [JAHWXR]
128568
128639
+
Cys
GCA
[ENA]
¡û
>W2110668746
JAICBW010000001
Bacteroidota
Hymenobacter sp. KCTC 23674 [JAICBW]
2374523
2374594
+
Cys
GCA
[ENA]
¡û
>W2110670332
JAIFAG010000001
Bacteroidota
Hymenobacter sp. PAMC 26554 [JAIFAG]
165528
165457
-
Cys
GCA
[ENA]
¡û
>W2110670336
JAIFAH010000001
Bacteroidota
Hymenobacter sp. PAMC 26553 [JAIFAH]
1295487
1295558
+
Cys
GCA
[ENA]
¡û
>C211060425
CP043644
Bacteroidota
Hymenobacter sp. NBH84 [CP043644]
575268
575339
+
Cys
GCA
-
¡û
>C211138862
CP060784
Bacteroidota
Hymenobacter qilianensis JCM 19763 [CP060784]
2686550
2686621
+
Cys
GCA
-
¡û
>C231346911
CP094669
Bacteroidota
Hymenobacter tibetensis KACC 21982 [CP094669]
4225204
4225133
-
Cys
GCA
-
¡û
>C231355737
CP095053
Bacteroidota
Hymenobacter sp. 5413J-13 [CP095053]
3112022
3111951
-
Cys
GCA
-
¡û
>C231355876
CP095061
Bacteroidota
Hymenobacter sp. 5420S-77 [CP095061]
3864325
3864254
-
Cys
GCA
-
¡û
>C231562044
CP114767
Bacteroidota
Hymenobacter sp. PAMC 29467 [CP114767]
2296828
2296757
-
Cys
GCA
-
¡û
>C231566023
CP115396
Bacteroidota
Hymenobacter yonginensis KCTC 22745 [CP115396]
2709817
2709746
-
Cys
GCA
-
¡û
>C241088062
CP044285
Bacteroidota
Hymenobacter baengnokdamensis BRD72 [CP044285]
1510882
1510809
-
Cys
GCA
-
¡û
>C241138828
CP049907
Bacteroidota
Hymenobacter sp. HDW8 [CP049907]
1663312
1663241
-
Cys
GCA
-
¡û
>C241162293
CP053904
Bacteroidota
Hymenobacter sp. BRD67 [CP053904]
4407186
4407113
-
Cys
GCA
-
¡û
>C241162335
CP053908
Bacteroidota
Hymenobacter sp. BRD128 [CP053908]
4398144
4398073
-
Cys
GCA
-
¡û
>W1511582948
LATM01000011
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
46840
46769
-
Cys
GCA
[ENA]
¡û
>C161061549
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
2625537
2625608
+
Cys
GCA
[Ensembl]
¡û
>C161070737
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3575061
3574990
-
Cys
GCA
[Ensembl]
¡û
>C161077102
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2459382
2459455
+
Cys
GCA
[Ensembl]
¡û
>W1710530556
FNOV01000004
Bacteroidota
Hymenobacter psychrophilus [FNOV]
309770
309841
+
Cys
GCA
[ENA]
¡û
>W1710553564
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
1026447
1026518
+
Cys
GCA
[ENA]
¡û
>W1710573754
FOXS01000006
Bacteroidota
Hymenobacter arizonensis [FOXS]
167293
167222
-
Cys
GCA
[ENA]
¡û
>W1710605422
FWWW01000076
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
26723
26794
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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