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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45173 (62 seq.)
>W1710809617
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
77625
77540
-
Leu
CAG
[ENA]
¡û
>W1711088460
LSYX01000140
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
2423
2508
+
Leu
CAG
[ENA]
¡û
>W1711088479
LSYY01000117
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
4606
4521
-
Leu
CAG
[ENA]
¡û
>W1711258810
LYUV01000002
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
7233
7148
-
Leu
CAG
[ENA]
¡û
>W1711258844
LYUW01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
6625
6540
-
Leu
CAG
[ENA]
¡û
>W1711258885
LYUX01000018
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
11050
11135
+
Leu
CAG
[ENA]
¡û
>W1711258930
LYUY01000051
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
6558
6473
-
Leu
CAG
[ENA]
¡û
>W1711466331
MJMG01000007
Alphaproteobacteria
Wolbachia pipientis [MJMG]
23424
23339
-
Leu
CAG
[ENA]
¡û
>W1711745714
MUJL01000095
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
3028
3113
+
Leu
CAG
[ENA]
¡û
>W1711745744
MUJM01000075
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
6203
6118
-
Leu
CAG
[ENA]
¡û
>W1712108435
NJBR01000041
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [NJBR]
10711
10624
-
Leu
CAG
[ENA]
¡û
>W131242647
CAOH01000082
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
130104
130189
+
Leu
CAG
[ENA]
¡û
>W131243117
CAOU02000032
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
35929
36014
+
Leu
CAG
[ENA]
¡û
>W131052819
AMZJ01000061
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
2122
2207
+
Leu
CAG
[ENA]
¡û
>C026834
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
956999
957083
+
Leu
CAG
[Ensembl]
¡û
>C026864
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
953875
953962
+
Leu
CAG
[Ensembl]
¡û
>w016809
AAQP01000221
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
675
588
-
Leu
CAG
[ENA]
¡û
>W141065639
AQQE01000062
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
3726
3811
+
Leu
CAG
[ENA]
¡û
>WENV181405250
OGCC01001690
[OGCC] insect metagenome; haemolymph
304
389
+
Leu
CAG
[ENA]
¢þ
>WENV181405274
OGCD01000008
[OGCD] insect metagenome; haemolymph
5124
5209
+
Leu
CAG
[ENA]
¢þ
>WENV181406108
OGCF01000959
[OGCF] insect metagenome; haemolymph
1975
1890
-
Leu
CAG
[ENA]
¢þ
>W141145086
AWUH01000099
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
6297
6212
-
Leu
CAG
[ENA]
¡û
>W141240225
CAGB01000117
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
27560
27475
-
Leu
CAG
[ENA]
¡û
>C08011418
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
1016040
1015955
-
Leu
CAG
[Ensembl]
¡û
>C191074333
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
1470672
1470587
-
Leu
CAG
-
¡û
>C191123098
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
286401
286487
+
Leu
CAG
-
¡û
>C191123162
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
39299
39214
-
Leu
CAG
-
¡û
>C191123196
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
39300
39215
-
Leu
CAG
-
¡û
>C191188740
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
31420
31335
-
Leu
CAG
-
¡û
>W09113854
ABZA01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
239925
239840
-
Leu
CAG
[ENA]
¡û
>W09121810
ACFP01000170
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
2802
2887
+
Leu
CAG
[ENA]
¡û
>W141812285
JQAM01000029
Alphaproteobacteria
Wolbachia pipientis [JQAM]
48695
48780
+
Leu
CAG
[ENA]
¡û
>C09111264
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1019795
1019880
+
Leu
CAG
[Ensembl]
¡û
>W1910753961
MKIF01000066
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
3114
3199
+
Leu
CAG
[ENA]
¡û
>W1910759041
MLZJ01000146
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
3109
3194
+
Leu
CAG
[ENA]
¡û
>W1910760288
MNCG01000146
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
3109
3194
+
Leu
CAG
[ENA]
¡û
>W1910794352
MRWX01000006
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
31361
31446
+
Leu
CAG
[ENA]
¡û
>W1910802365
MSYL01000242
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
3114
3199
+
Leu
CAG
[ENA]
¡û
>W1911239462
NSDR01000081
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
6861
6776
-
Leu
CAG
[ENA]
¡û
>W1911239502
NSDS01000081
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
3157
3242
+
Leu
CAG
[ENA]
¡û
>W1911239540
NSDT01000102
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
6372
6287
-
Leu
CAG
[ENA]
¡û
>W1911281118
NTHL01000068
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
7086
7001
-
Leu
CAG
[ENA]
¡û
>W1911412148
NWVH01000033
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
4639
4724
+
Leu
CAG
[ENA]
¡û
>W1911412203
NWVI01000115
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
4814
4729
-
Leu
CAG
[ENA]
¡û
>W1911412246
NWVJ01000073
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
1607
1692
+
Leu
CAG
[ENA]
¡û
>W1911412272
NWVK01000029
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVK]
1607
1692
+
Leu
CAG
[ENA]
¡û
>W1911545125
OUNE01000163
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
1550
1635
+
Leu
CAG
[ENA]
¡û
>C151101114
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
210695
210610
-
Leu
CAG
-
¡û
>C151102219
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1085253
1085168
-
Leu
CAG
[Ensembl]
¡û
>W1510562612
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
512410
512325
-
Leu
CAG
[ENA]
¡û
>W11145947
AERW01000235
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
370
285
-
Leu
CAG
[ENA]
¡û
>W11185735
CACK01000099
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
2220
2305
+
Leu
CAG
[ENA]
¡û
>C131019585
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
572859
572774
-
Leu
CAG
[Ensembl]
¡û
>C131009117
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
660445
660530
+
Leu
CAG
[Ensembl]
¡û
>C131009150
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
986376
986461
+
Leu
CAG
[Ensembl]
¡û
>W1610673723
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
77625
77540
-
Leu
CAG
[ENA]
¡û
>W1610922999
LSYX01000140
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
2423
2508
+
Leu
CAG
[ENA]
¡û
>W1610923018
LSYY01000117
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
4606
4521
-
Leu
CAG
[ENA]
¡û
>W1611021075
LYUV01000002
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
7233
7148
-
Leu
CAG
[ENA]
¡û
>W1611021109
LYUW01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
6625
6540
-
Leu
CAG
[ENA]
¡û
>W1611021150
LYUX01000018
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
11050
11135
+
Leu
CAG
[ENA]
¡û
>W1611021195
LYUY01000051
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
6558
6473
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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