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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452595 (258 seq.)
>W1710808910
LKDZ01000006
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
81836
81911
+
Asn
GTT
[ENA]
¡û
>W1710808911
LKDZ01000006
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
82117
82192
+
Asn
GTT
[ENA]
¡û
>W1710859977
LMCN01000001
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
382398
382323
-
Asn
GTT
[ENA]
¡û
>W1710861273
LMDM01000009
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
54567
54642
+
Asn
GTT
[ENA]
¡û
>W1710861775
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
178807
178732
-
Asn
GTT
[ENA]
¡û
>W1710866436
LMHL01000026
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
33443
33518
+
Asn
GTT
[ENA]
¡û
>W1710867481
LMIH01000041
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
215969
216044
+
Asn
GTT
[ENA]
¡û
>W1710867573
LMIJ01000046
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
124071
123996
-
Asn
GTT
[ENA]
¡û
>W1710870506
LMKO01000012
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
563363
563438
+
Asn
GTT
[ENA]
¡û
>W1711123813
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
228962
229037
+
Asn
GTT
[ENA]
¡û
>W1711123814
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
229243
229318
+
Asn
GTT
[ENA]
¡û
>W1711143344
LVHG01000025
Betaproteobacteria
Variovorax paradoxus [LVHG]
136523
136448
-
Asn
GTT
[ENA]
¡û
>W1711147359
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
881946
881871
-
Asn
GTT
[ENA]
¡û
>W1711149068
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
545554
545479
-
Asn
GTT
[ENA]
¡û
>W1711149104
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
579775
579700
-
Asn
GTT
[ENA]
¡û
>W1711149141
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
318033
317958
-
Asn
GTT
[ENA]
¡û
>W1711149178
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1007134
1007059
-
Asn
GTT
[ENA]
¡û
>W1711386524
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
496201
496126
-
Asn
GTT
[ENA]
¡û
>W1711386525
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
495962
495887
-
Asn
GTT
[ENA]
¡û
>W1711387498
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
256221
256296
+
Asn
GTT
[ENA]
¡û
>W1711387499
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
256460
256535
+
Asn
GTT
[ENA]
¡û
>W1711394903
MESN01000804
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
225
150
-
Asn
GTT
[ENA]
¡û
>W1711394991
MESQ01000011
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
18179
18253
+
Asn
GTT
[ENA]
¡û
>W1711421601
MHZG01000008
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
11462
11387
-
Asn
GTT
[ENA]
¡û
>W1711421781
MHZV01000011
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_19 [MHZV]
29814
29889
+
Asn
GTT
[ENA]
¡û
>W1711505752
MKVU01000020
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
366461
366536
+
Asn
GTT
[ENA]
¡û
>W1711506635
MKWO01000041
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
200027
199952
-
Asn
GTT
[ENA]
¡û
>W1711506636
MKWO01000041
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
199788
199713
-
Asn
GTT
[ENA]
¡û
>W1711581686
MNUL01000005
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
1042
967
-
Asn
GTT
[ENA]
¡û
>W1711583978
MNXX01000044
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
8295
8370
+
Asn
GTT
[ENA]
¡û
>W1711584010
MNXY01000005
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
4240
4315
+
Asn
GTT
[ENA]
¡û
>W1711709062
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
931034
930959
-
Asn
GTT
[ENA]
¡û
>W1711721695
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
502462
502537
+
Asn
GTT
[ENA]
¡û
>W1711721704
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
2910625
2910700
+
Asn
GTT
[ENA]
¡û
>W1711751403
MUNS01000029
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
52257
52332
+
Asn
GTT
[ENA]
¡û
>W1712077030
NGUO01000010
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
131604
131679
+
Asn
GTT
[ENA]
¡û
>W1712077192
NGUR01000017
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
61475
61400
-
Asn
GTT
[ENA]
¡û
>W1712096698
NIAZ01000003
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
4709
4784
+
Asn
GTT
[ENA]
¡û
>C171007343
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
989397
989472
+
Asn
GTT
-
¡û
>C171035133
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1025669
1025594
-
Asn
GTT
-
¡û
>C171035171
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1044508
1044433
-
Asn
GTT
-
¡û
>C171035209
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
972548
972473
-
Asn
GTT
-
¡û
>C171091694
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
2236656
2236731
+
Asn
GTT
-
¡û
>C171091745
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1760149
1760074
-
Asn
GTT
-
¡û
>C171120958
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
1464419
1464344
-
Asn
GTT
-
¡û
>W131174625
ARIP01000053
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
16148
16223
+
Asn
GTT
[ENA]
¡û
>C017400
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
881946
881871
-
Asn
GTT
[Ensembl]
¡û
>C018628
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1564597
1564522
-
Asn
GTT
[Ensembl]
¡û
>WENV180016736
FSVW01000693
[FSVW] metagenome; soil
4519
4444
-
Asn
GTT
[ENA]
¢þ
>WENV180016742
FSVW01000833
[FSVW] metagenome; soil
3090
3164
+
Asn
GTT
[ENA]
¢þ
>WENV180016802
FSVW01002659
[FSVW] metagenome; soil
45
120
+
Asn
GTT
[ENA]
¢þ
>WENV180016807
FSVW01002745
[FSVW] metagenome; soil
3149
3223
+
Asn
GTT
[ENA]
¢þ
>w008213
AAJK01000004
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
56340
56417
+
Asn
GTT
[ENA]
¡û
>WENV180255473
OBEQ010728898
[OBEQ] groundwater metagenome; groundwater
972
897
-
Asn
GTT
[ENA]
¢þ
>WENV180304759
OBJI01373656
[OBJI] soil metagenome; soil
64
139
+
Asn
GTT
[ENA]
¢þ
>WENV180344595
OBLL01056982
[OBLL] soil metagenome; soil
22
97
+
Asn
GTT
[ENA]
¢þ
>WENV180391350
OBPM01101066
[OBPM] marine metagenome; ENVO:00002010
281
356
+
Asn
GTT
[ENA]
¢þ
>WENV181315132
OFJN01000326
[OFJN] marine metagenome; sea ice
563
638
+
Asn
GTT
[ENA]
¢þ
>WENV181324180
OFLC01002936
[OFLC] marine metagenome; melt pond
737
662
-
Asn
GTT
[ENA]
¢þ
>WENV181361133
OFNH01000189
[OFNH] sediment metagenome; Lake sediment
1726
1651
-
Asn
GTT
[ENA]
¢þ
>WENV181363110
OFOS01000017
[OFOS] sediment metagenome; Lake sediment
2448
2523
+
Asn
GTT
[ENA]
¢þ
>WENV181364498
OFOW01000150
[OFOW] sediment metagenome; Lake sediment
2443
2518
+
Asn
GTT
[ENA]
¢þ
>WENV181364537
OFOY01000005
[OFOY] sediment metagenome; Lake sediment
54076
54001
-
Asn
GTT
[ENA]
¢þ
>WENV181364591
OFOZ01000059
[OFOZ] sediment metagenome; Lake sediment
2447
2522
+
Asn
GTT
[ENA]
¢þ
>WENV181364651
OFPA01000031
[OFPA] sediment metagenome; Lake sediment
2459
2534
+
Asn
GTT
[ENA]
¢þ
>WENV181364725
OFPB01000053
[OFPB] sediment metagenome; Lake sediment
20009
19934
-
Asn
GTT
[ENA]
¢þ
>WENV181364835
OFPE01000917
[OFPE] sediment metagenome; Lake sediment
1411
1486
+
Asn
GTT
[ENA]
¢þ
>WENV181364939
OFPG01000201
[OFPG] sediment metagenome; Lake sediment
2063
1988
-
Asn
GTT
[ENA]
¢þ
>WENV181364998
OFPH01000083
[OFPH] sediment metagenome; Lake sediment
5460
5385
-
Asn
GTT
[ENA]
¢þ
>WENV181365034
OFPI01000009
[OFPI] sediment metagenome; Lake sediment
2480
2555
+
Asn
GTT
[ENA]
¢þ
>WENV181365089
OFPJ01000050
[OFPJ] sediment metagenome; Lake sediment
20057
19982
-
Asn
GTT
[ENA]
¢þ
>WENV181365133
OFPK01000008
[OFPK] sediment metagenome; Lake sediment
2465
2540
+
Asn
GTT
[ENA]
¢þ
>WENV181365196
OFPL01000055
[OFPL] sediment metagenome; Lake sediment
20024
19949
-
Asn
GTT
[ENA]
¢þ
>WENV181365277
OFPN01000013
[OFPN] sediment metagenome; Lake sediment
54310
54235
-
Asn
GTT
[ENA]
¢þ
>WENV181365331
OFPO01000077
[OFPO] sediment metagenome; Lake sediment
14153
14078
-
Asn
GTT
[ENA]
¢þ
>WENV181365404
OFPQ01000415
[OFPQ] sediment metagenome; Lake sediment
2452
2527
+
Asn
GTT
[ENA]
¢þ
>WENV181365447
OFPR01000140
[OFPR] sediment metagenome; Lake sediment
2520
2595
+
Asn
GTT
[ENA]
¢þ
>WENV181367206
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
531
606
+
Asn
GTT
[ENA]
¢þ
>WENV181379502
OFRD01002292
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1557
1482
-
Asn
GTT
[ENA]
¢þ
>W141142457
AWQR01000037
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
24514
24589
+
Asn
GTT
[ENA]
¡û
>W141170120
AXXB01000009
Betaproteobacteria
Variovorax sp. JGI 0001016-C20 [AXXB]
27166
27241
+
Asn
GTT
[ENA]
¡û
>W141170123
AXXC01000006
Betaproteobacteria
Variovorax sp. JGI 0001014-H11 [AXXC]
714
639
-
Asn
GTT
[ENA]
¡û
>W141170367
AXXS01000013
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
20288
20213
-
Asn
GTT
[ENA]
¡û
>WENV183689169
ORMF011399273
[ORMF] groundwater metagenome; groundwater
2103
2028
-
Asn
GTT
[ENA]
¢þ
>WENV183735578
PJUB01000071
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
84768
84693
-
Asn
GTT
[ENA]
¢þ
>WENV183736215
PJUC01000155
[PJUC] soil metagenome; Soil enriched on filter paper
12114
12189
+
Asn
GTT
[ENA]
¢þ
>WENV183741389
PJUG01000002
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
323748
323673
-
Asn
GTT
[ENA]
¢þ
>WENV183741896
PJUH01000003
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
490326
490401
+
Asn
GTT
[ENA]
¢þ
>WENV183744374
PJUK01013788
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1
76
+
Asn
GTT
[ENA]
¢þ
>WENV183744375
PJUK01013788
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
230
305
+
Asn
GTT
[ENA]
¢þ
>WENV170010156
APMI01009859
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2322
2247
-
Asn
GTT
[ENA]
¢þ
>WENV170555974
CXWL01003583
[CXWL] groundwater metagenome; biofilm material
2996
3071
+
Asn
GTT
[ENA]
¢þ
>WENV170556976
CXWL01017005
[CXWL] groundwater metagenome; biofilm material
16565
16490
-
Asn
GTT
[ENA]
¢þ
>WENV170558474
CXWL01072667
[CXWL] groundwater metagenome; biofilm material
2135
2210
+
Asn
GTT
[ENA]
¢þ
>WENV170559262
CXWL01116473
[CXWL] groundwater metagenome; biofilm material
354
279
-
Asn
GTT
[ENA]
¢þ
>WENV170559418
CXWL01122809
[CXWL] groundwater metagenome; biofilm material
90
15
-
Asn
GTT
[ENA]
¢þ
>WENV170559751
CXWL01146069
[CXWL] groundwater metagenome; biofilm material
6545
6470
-
Asn
GTT
[ENA]
¢þ
>WENV170599468
FUWD010075688
[FUWD] metagenome; unknown
77
152
+
Asn
GTT
[ENA]
¢þ
>WENV170600647
FUWD010136360
[FUWD] metagenome; unknown
110
35
-
Asn
GTT
[ENA]
¢þ
>WENV170617277
FUWD012920039
[FUWD] metagenome; unknown
275
200
-
Asn
GTT
[ENA]
¢þ
>WENV170624900
FUWD013188592
[FUWD] metagenome; unknown
1326
1251
-
Asn
GTT
[ENA]
¢þ
>WENV170624901
FUWD013188593
[FUWD] metagenome; unknown
78
3
-
Asn
GTT
[ENA]
¢þ
>WENV170633162
FUWD013392324
[FUWD] metagenome; unknown
1326
1251
-
Asn
GTT
[ENA]
¢þ
>WENV170633163
FUWD013392325
[FUWD] metagenome; unknown
78
3
-
Asn
GTT
[ENA]
¢þ
>WENV170639430
JFJP01002632
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8992
9067
+
Asn
GTT
[ENA]
¢þ
>WENV170639465
JFJP01003051
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12110
12035
-
Asn
GTT
[ENA]
¢þ
>WENV170639507
JFJP01003807
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
93
168
+
Asn
GTT
[ENA]
¢þ
>WENV170639677
JFJP01005862
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10227
10302
+
Asn
GTT
[ENA]
¢þ
>WENV170639808
JFJP01008699
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12
87
+
Asn
GTT
[ENA]
¢þ
>WENV170706930
LNAP01009134
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2817
2892
+
Asn
GTT
[ENA]
¢þ
>WENV170707158
LNAP01013977
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
20
95
+
Asn
GTT
[ENA]
¢þ
>WENV170708132
LNAP01051781
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1306
1231
-
Asn
GTT
[ENA]
¢þ
>WENV170708400
LNAP01078190
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
901
826
-
Asn
GTT
[ENA]
¢þ
>WENV170708665
LNAP01101418
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
174
249
+
Asn
GTT
[ENA]
¢þ
>WENV170961475
MLJW01000065
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
27243
27318
+
Asn
GTT
[ENA]
¢þ
>WENV171003585
NNBU01000588
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
27081
27156
+
Asn
GTT
[ENA]
¢þ
>WENV171003586
NNBU01000588
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
27311
27386
+
Asn
GTT
[ENA]
¢þ
>WENV171003772
NNBV01000709
[NNBV] plant metagenome; symbiotic tissue sample KVS11
39646
39721
+
Asn
GTT
[ENA]
¢þ
>WENV171003773
NNBV01000709
[NNBV] plant metagenome; symbiotic tissue sample KVS11
39877
39952
+
Asn
GTT
[ENA]
¢þ
>C181008353
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
2923924
2923999
+
Asn
GTT
-
¡û
>C181014191
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
5163735
5163810
+
Asn
GTT
-
¡û
>C181060446
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
881781
881706
-
Asn
GTT
-
¡û
>C181060447
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
881627
881552
-
Asn
GTT
-
¡û
>C181060489
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3685976
3685901
-
Asn
GTT
-
¡û
>C181060490
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3685822
3685747
-
Asn
GTT
-
¡û
>C181078470
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4077260
4077335
+
Asn
GTT
-
¡û
>C181078471
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4077525
4077600
+
Asn
GTT
-
¡û
>C181158557
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
23557
23632
+
Asn
GTT
-
¡û
>C181158558
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
23686
23761
+
Asn
GTT
-
¡û
>C181159415
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
846985
846910
-
Asn
GTT
-
¡û
>C181218895
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
808769
808694
-
Asn
GTT
-
¡û
>C181218911
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
664518
664593
+
Asn
GTT
-
¡û
>C191072708
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
4170305
4170380
+
Asn
GTT
-
¡û
>W141561779
JHYS01000013
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
91719
91644
-
Asn
GTT
[ENA]
¡û
>W141561786
JHYS01000023
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
94
19
-
Asn
GTT
[ENA]
¡û
>W141727691
JNFG01000200
Betaproteobacteria
Caballeronia sordidicola [JNFG]
112232
112307
+
Asn
GTT
[ENA]
¡û
>W09102208
AAHL01000029
Betaproteobacteria
Burkholderia cenocepacia HI2424 [AAHL]
198
273
+
Asn
GTT
[ENA]
¡û
>W09106287
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
10954
10879
-
Asn
GTT
[ENA]
¡û
>W09119938
ACEE01000034
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
17272
17347
+
Asn
GTT
[ENA]
¡û
>W141820624
JQNA01000001
Betaproteobacteria
Burkholderia sp. 9120 [JQNA]
1150958
1151033
+
Asn
GTT
[ENA]
¡û
>W141820625
JQNA01000001
Betaproteobacteria
Burkholderia sp. 9120 [JQNA]
1151096
1151171
+
Asn
GTT
[ENA]
¡û
>C09111124
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2554662
2554587
-
Asn
GTT
[Ensembl]
¡û
>C141002575
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2688032
2687957
-
Asn
GTT
[Ensembl]
¡û
>C141003811
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
870466
870391
-
Asn
GTT
[Ensembl]
¡û
>W1910699904
MESA01000007
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
102734
102809
+
Asn
GTT
[ENA]
¡û
>W1910700354
MESK01000110
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
200430
200355
-
Asn
GTT
[ENA]
¡û
>W1910744117
MHZY01000217
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
557
482
-
Asn
GTT
[ENA]
¡û
>W1910792841
MRCN01000021
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
34311
34386
+
Asn
GTT
[ENA]
¡û
>W1910792842
MRCN01000021
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
34576
34651
+
Asn
GTT
[ENA]
¡û
>W1910804538
MTHB01000023
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
177195
177270
+
Asn
GTT
[ENA]
¡û
>W1910808340
MTZV01000002
Betaproteobacteria
Paraburkholderia acidicola ATCC 31363 [MTZV]
572045
572120
+
Asn
GTT
[ENA]
¡û
>W1910856327
NBTA01000018
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
47956
48031
+
Asn
GTT
[ENA]
¡û
>W1910889267
NESO01000002
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
442507
442582
+
Asn
GTT
[ENA]
¡û
>W1910889294
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
273215
273290
+
Asn
GTT
[ENA]
¡û
>W1911490734
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
323869
323944
+
Asn
GTT
[ENA]
¡û
>W1911496695
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4230689
4230764
+
Asn
GTT
[ENA]
¡û
>W1911497757
OCSR01000001
Betaproteobacteria
Burkholderia sp. OK233 [OCSR]
1392426
1392501
+
Asn
GTT
[ENA]
¡û
>W1911497758
OCSR01000001
Betaproteobacteria
Burkholderia sp. OK233 [OCSR]
1392564
1392639
+
Asn
GTT
[ENA]
¡û
>W1911498114
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
3559834
3559909
+
Asn
GTT
[ENA]
¡û
>W1911647327
QAJK01000024
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
138632
138557
-
Asn
GTT
[ENA]
¡û
>W1911647328
QAJK01000024
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
138405
138330
-
Asn
GTT
[ENA]
¡û
>W1911770734
QXJC01000001
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
258773
258698
-
Asn
GTT
[ENA]
¡û
>W1911770735
QXJC01000001
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
258643
258568
-
Asn
GTT
[ENA]
¡û
>W1810072208
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
318578
318653
+
Asn
GTT
[ENA]
¡û
>W1810072209
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
318842
318917
+
Asn
GTT
[ENA]
¡û
>W1810089227
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
3007832
3007907
+
Asn
GTT
[ENA]
¡û
>W1810101997
PGTX01000001
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
84420
84345
-
Asn
GTT
[ENA]
¡û
>SRA1003037
SRR002326.165342
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
141
66
-
Asn
GTT
[SRA]
>SRA1003075
SRR002326.183360
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
20
95
+
Asn
GTT
[SRA]
>SRA1003165
SRR002326.264531
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
82
7
-
Asn
GTT
[SRA]
>W1810192722
PKMT01000003
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
624707
624782
+
Asn
GTT
[ENA]
¡û
>W1810192723
PKMT01000003
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
624992
625067
+
Asn
GTT
[ENA]
¡û
>SRA1003623
SRR002327.71906
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
237
162
-
Asn
GTT
[SRA]
>SRA1003624
SRR002327.71906
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
124
49
-
Asn
GTT
[SRA]
>SRA1003654
SRR002327.98037
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
130
+
Asn
GTT
[SRA]
>SRA1003969
SRR002328.65499
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
170
95
-
Asn
GTT
[SRA]
>SRA1004018
SRR002328.98486
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
3
78
+
Asn
GTT
[SRA]
>SRA1004019
SRR002328.98486
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
159
234
+
Asn
GTT
[SRA]
>SRA1004149
SRR002328.172717
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
3
78
+
Asn
GTT
[SRA]
>W1810305838
PTQX01000002
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
62696
62621
-
Asn
GTT
[ENA]
¡û
>W1810427552
PYYA01000008
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
133998
134073
+
Asn
GTT
[ENA]
¡û
>W1810486647
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
367423
367348
-
Asn
GTT
[ENA]
¡û
>W1810486648
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
367183
367108
-
Asn
GTT
[ENA]
¡û
>W1810570311
QEII01000272
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
63441
63366
-
Asn
GTT
[ENA]
¡û
>W1810570312
QEII01000272
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
63295
63220
-
Asn
GTT
[ENA]
¡û
>W1810573081
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
1281385
1281460
+
Asn
GTT
[ENA]
¡û
>W1810573082
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
1281511
1281586
+
Asn
GTT
[ENA]
¡û
>W1810577502
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
476875
476800
-
Asn
GTT
[ENA]
¡û
>W1810577503
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
476637
476562
-
Asn
GTT
[ENA]
¡û
>W1810594317
QFZK01000001
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
281368
281293
-
Asn
GTT
[ENA]
¡û
>W1810672518
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
367423
367348
-
Asn
GTT
[ENA]
¡û
>W1810672519
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
367183
367108
-
Asn
GTT
[ENA]
¡û
>W1810676086
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
367423
367348
-
Asn
GTT
[ENA]
¡û
>W1810676087
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
367183
367108
-
Asn
GTT
[ENA]
¡û
>W1810677458
QKMS01000006
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
25929
26004
+
Asn
GTT
[ENA]
¡û
>W1810677459
QKMS01000006
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
26112
26187
+
Asn
GTT
[ENA]
¡û
>W1810682455
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
367423
367348
-
Asn
GTT
[ENA]
¡û
>W1810682456
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
367183
367108
-
Asn
GTT
[ENA]
¡û
>W1810884745
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
1625640
1625715
+
Asn
GTT
[ENA]
¡û
>W1810884746
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
1625766
1625841
+
Asn
GTT
[ENA]
¡û
>SRA1014712
SRR023845.275043
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
232
157
-
Asn
GTT
[SRA]
>SRA1015335
SRR023846.21796
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
146
221
+
Asn
GTT
[SRA]
>SRA1016090
SRR023846.343338
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
146
221
+
Asn
GTT
[SRA]
>C151000933
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
1717382
1717307
-
Asn
GTT
[Ensembl]
¡û
>C151079009
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
989396
989471
+
Asn
GTT
[Ensembl]
¡û
>C151083366
CP011501
Betaproteobacteria
Pandoraea apista AU2161 [CP011501]
4897426
4897501
+
Asn
GTT
[Ensembl]
¡û
>ENV09001466
ABSR01012996
Freshwater sediment metagenome lwMethylamine_C1
101
176
+
Asn
GTT
[ENA]
¡û
>W1510100632
CEWL01000010
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
199846
199921
+
Asn
GTT
[ENA]
¡û
>W1510766066
JANU01000006
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
97550
97625
+
Asn
GTT
[ENA]
¡û
>W1511397475
JTCR01000056
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
14853
14778
-
Asn
GTT
[ENA]
¡û
>W1511397484
JTCS01000005
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
14814
14739
-
Asn
GTT
[ENA]
¡û
>C11123613
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
2813202
2813127
-
Asn
GTT
[Ensembl]
¡û
>W1511508934
JXQQ01000038
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
51618
51543
-
Asn
GTT
[ENA]
¡û
>W1511554988
JZWI01000005
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
179673
179748
+
Asn
GTT
[ENA]
¡û
>WENV055883
AACY023242905
Marine microbial communities from Global Ocean Sampling (GOS)
997
1074
+
Asn
GTT
[ENA]
>C161056176
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
870571
870646
+
Asn
GTT
-
¡û
>C161056177
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
870734
870809
+
Asn
GTT
-
¡û
>C161056277
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
4591783
4591708
-
Asn
GTT
-
¡û
>C161059546
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
3176986
3177061
+
Asn
GTT
[Ensembl]
¡û
>C161073178
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
4244236
4244311
+
Asn
GTT
[Ensembl]
¡û
>W121102804
AKXS01000046
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
5048
4973
-
Asn
GTT
[ENA]
¡û
>W1610002258
AEJF01000006
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
42363
42438
+
Asn
GTT
[ENA]
¡û
>W1610072145
BCUS01000016
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
18643
18568
-
Asn
GTT
[ENA]
¡û
>W1610072146
BCUS01000016
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
18378
18303
-
Asn
GTT
[ENA]
¡û
>W1610072180
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
114697
114772
+
Asn
GTT
[ENA]
¡û
>W1610206792
FCOK02000037
Betaproteobacteria
Caballeronia udeis [FCOK]
49556
49631
+
Asn
GTT
[ENA]
¡û
>W1610506460
FLQY01000114
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
6836
6761
-
Asn
GTT
[ENA]
¡û
>W1610722323
LMCN01000001
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
382398
382323
-
Asn
GTT
[ENA]
¡û
>W1610723619
LMDM01000009
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
54567
54642
+
Asn
GTT
[ENA]
¡û
>W1610724121
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
178807
178732
-
Asn
GTT
[ENA]
¡û
>W1610728782
LMHL01000026
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
33443
33518
+
Asn
GTT
[ENA]
¡û
>W1610729827
LMIH01000041
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
215969
216044
+
Asn
GTT
[ENA]
¡û
>W1610729919
LMIJ01000046
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
124071
123996
-
Asn
GTT
[ENA]
¡û
>W1610732852
LMKO01000012
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
563363
563438
+
Asn
GTT
[ENA]
¡û
>W1610954352
LVHG01000025
Betaproteobacteria
Variovorax paradoxus [LVHG]
136523
136448
-
Asn
GTT
[ENA]
¡û
>W1710003697
AEJF01000006
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
42363
42438
+
Asn
GTT
[ENA]
¡û
>W1710069347
BCUS01000016
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
18643
18568
-
Asn
GTT
[ENA]
¡û
>W1710069348
BCUS01000016
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
18378
18303
-
Asn
GTT
[ENA]
¡û
>W1710069382
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
114697
114772
+
Asn
GTT
[ENA]
¡û
>W1710207542
FCOK02000037
Betaproteobacteria
Caballeronia udeis [FCOK]
49556
49631
+
Asn
GTT
[ENA]
¡û
>W1710498963
FLQY01000114
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
6836
6761
-
Asn
GTT
[ENA]
¡û
>W1710506193
FMUJ01000003
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
628626
628701
+
Asn
GTT
[ENA]
¡û
>W1710512063
FMZC01000006
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
119276
119351
+
Asn
GTT
[ENA]
¡û
>W1710512064
FMZC01000006
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
119415
119490
+
Asn
GTT
[ENA]
¡û
>W1710517956
FNDR01000007
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
133376
133301
-
Asn
GTT
[ENA]
¡û
>W1710530024
FNOL01000005
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
120332
120257
-
Asn
GTT
[ENA]
¡û
>W1710531352
FNPM01000002
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
636537
636612
+
Asn
GTT
[ENA]
¡û
>W1710542710
FNZJ01000003
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
125860
125785
-
Asn
GTT
[ENA]
¡û
>W1710542711
FNZJ01000003
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
125631
125556
-
Asn
GTT
[ENA]
¡û
>W1710554282
FOII01000001
Betaproteobacteria
Variovorax sp. OV084 [FOII]
1164570
1164645
+
Asn
GTT
[ENA]
¡û
>W1710557424
FOKZ01000044
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
14639
14714
+
Asn
GTT
[ENA]
¡û
>W1710558149
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
125806
125731
-
Asn
GTT
[ENA]
¡û
>W1710558150
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
125577
125502
-
Asn
GTT
[ENA]
¡û
>W1710564853
FOQU01000003
Betaproteobacteria
Paraburkholderia megapolitana [FOQU]
725664
725589
-
Asn
GTT
[ENA]
¡û
>W1710572104
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
649800
649875
+
Asn
GTT
[ENA]
¡û
>W1710572105
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
650030
650105
+
Asn
GTT
[ENA]
¡û
>W1710573291
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
1173499
1173424
-
Asn
GTT
[ENA]
¡û
>W1710592658
FRCQ01000007
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
165721
165646
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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