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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452818 (65 seq.)
>W1710827048
LLES02000009
Bacillota
Clostridium sporogenes [LLES]
125948
126023
+
Met
CAT
[ENA]
¡û
>W1710857095
LLZV01000037
Bacillota
Clostridium sporogenes [LLZV]
125948
126023
+
Met
CAT
[ENA]
¡û
>W1710857149
LLZW02000014
Bacillota
Clostridium sporogenes [LLZW]
126137
126212
+
Met
CAT
[ENA]
¡û
>W1711116164
LUAU01000019
Bacillota
Clostridium sporogenes [LUAU]
477
552
+
Met
CAT
[ENA]
¡û
>W1711664608
MRAC01000011
Bacillota
Clostridium sporogenes [MRAC]
126338
126413
+
Met
CAT
[ENA]
¡û
>W1711732715
MTVX01000001
Bacillota
Clostridioides difficile [MTVX]
1065918
1065993
+
Met
CAT
[ENA]
¡û
>W1711733323
MTWE01000001
Bacillota
Clostridioides difficile [MTWE]
35709
35784
+
Met
CAT
[ENA]
¡û
>W1711792161
MWJJ01000005
Bacillota
Clostridium sporogenes [MWJJ]
128847
128922
+
Met
CAT
[ENA]
¡û
>W08008159
ABKW02000003
Bacillota
Clostridium sporogenes ATCC 15579 [ABKW]
570531
570606
+
Met
CAT
[ENA]
¡û
>W141255324
CBTZ010000243
Bacillota
[Clostridium] dakarense 1 [CBTZ]
9
84
+
Met
CAT
[ENA]
¡û
>WENV182965866
OKWT01000766
[OKWT] human gut metagenome; stool
2041
1966
-
fMet
CAT
[ENA]
¢þ
>WENV170661391
JXWV01019096
[JXWV] soil metagenome; rice field; organic FYM Plot
214
139
-
Met
CAT
[ENA]
¢þ
>W141451962
JFBQ01000003
Bacillota
Clostridium sporogenes [JFBQ]
81368
81443
+
Met
CAT
[ENA]
¡û
>PL191001172
CP033217
Firmicutes
Clostridioides difficile CD21062 plasmid:unnamed1 (CP033217)
108915
108840
-
Met
CAT
[ENA]
¡û
>C181136493
CP026613
Bacillota
Clostridioides difficile R1 [CP026613]
35843
35918
+
Met
CAT
-
¡û
>C181136583
CP026614
Bacillota
Clostridioides difficile R2 [CP026614]
35843
35918
+
Met
CAT
-
¡û
>C181136680
CP026615
Bacillota
Clostridioides difficile R3 [CP026615]
4059000
4058925
-
Met
CAT
-
¡û
>C181159436
CP027775
Bacillota
Clostridium botulinum MFBjulcb1 [CP027775]
2877121
2877196
+
Met
CAT
-
¡û
>C181159531
CP027776
Bacillota
Clostridium botulinum Mfbjulcb5 [CP027776]
3214675
3214600
-
Met
CAT
-
¡û
>C181159587
CP027777
Bacillota
Clostridium botulinum Mfbjulcb8 [CP027777]
3219841
3219766
-
Met
CAT
-
¡û
>C181159644
CP027778
Bacillota
Clostridium botulinum Mfbjulcb6 [CP027778]
3258886
3258811
-
Met
CAT
-
¡û
>C191009758
CP012325
Bacillota
Clostridioides difficile DSM 29020 [CP012325]
35668
35743
+
Met
CAT
-
¡û
>C191016806
CP019864
Bacillota
Clostridioides difficile DSM 29747 [CP019864]
35709
35784
+
Met
CAT
-
¡û
>C191103423
CP033213
Bacillota
Clostridioides difficile CD10010 [CP033213]
35607
35682
+
Met
CAT
-
¡û
>C191103513
CP033214
Bacillota
Clostridioides difficile 12038 [CP033214]
35606
35681
+
Met
CAT
-
¡û
>C191103623
CP033216
Bacillota
Clostridioides difficile CD21062 [CP033216]
35709
35784
+
Met
CAT
-
¡û
>W1910284863
FRES01000002
Bacillota
Clostridioides difficile M120 [FRES]
35708
35783
+
Met
CAT
[ENA]
¡û
>W1910284954
FRET01000001
Bacillota
Clostridioides difficile CD105HS27 [FRET]
2681538
2681463
-
Met
CAT
[ENA]
¡û
>W1910379754
FULT01000016
Bacillota
Clostridioides difficile VRECD0123 [FULT]
589
664
+
Met
CAT
[ENA]
¡û
>W1910383076
FUNE01000040
Bacillota
Clostridioides difficile VRECD0003 [FUNE]
1979
1904
-
Met
CAT
[ENA]
¡û
>W1910770533
MOPU01000046
Bacillota
Clostridioides difficile 5538-BK/ST11 [MOPU]
508
433
-
Met
CAT
[ENA]
¡û
>W1910774329
MOTC01000073
Bacillota
Clostridioides difficile 6615-NonSp/ST11 [MOTC]
378
303
-
Met
CAT
[ENA]
¡û
>W1910778853
MPEZ01000121
Bacillota
Clostridioides difficile 7461-BK/ST11 [MPEZ]
508
433
-
Met
CAT
[ENA]
¡û
>W1910783118
MPJO01000098
Bacillota
Clostridioides difficile 6606-BK/ST11 [MPJO]
324
249
-
Met
CAT
[ENA]
¡û
>W1911517331
OEZS01000021
Bacillota
Clostridioides difficile 51377 [OEZS]
165
90
-
Met
CAT
[ENA]
¡û
>W1911517409
OEZT01000011
Bacillota
Clostridioides difficile IS 58 [OEZT]
1077
1152
+
Met
CAT
[ENA]
¡û
>W1911517757
OEZZ01000060
Bacillota
Clostridioides difficile SUC36 [OEZZ]
313
388
+
Met
CAT
[ENA]
¡û
>W1911577047
PDLH01000005
Bacillota
Clostridium sporogenes FDAARGOS_423 [PDLH]
350447
350372
-
Met
CAT
[ENA]
¡û
>C151045889
CP009225
Bacillota
Clostridium sporogenes NCIMB 10696 [CP009225]
4025468
4025393
-
Met
CAT
[Ensembl]
¡û
>C151085980
CP011663
Bacillota
Clostridium sporogenes DSM 795 [CP011663]
4026475
4026400
-
Met
CAT
[Ensembl]
¡û
>C10103166
FN665653
Bacillota
Clostridioides difficile M120 [FN665653]
35667
35742
+
Met
CAT
[Ensembl]
¡û
>W1511511277
JXSU01000009
Bacillota
Clostridium botulinum B2 450 [JXSU]
17905
17830
-
Met
CAT
[ENA]
¡û
>W1511544329
JZJN01000012
Bacillota
Clostridium sporogenes 11579 [JZJN]
15381
15306
-
Met
CAT
[ENA]
¡û
>W1511544412
JZJO01000165
Bacillota
Clostridium sporogenes 85-3852 [JZJO]
15395
15320
-
Met
CAT
[ENA]
¡û
>W1511565801
LAGD01000209
Bacillota
Clostridium botulinum ATCC 51387 [LAGD]
15456
15381
-
Met
CAT
[ENA]
¡û
>W1511566230
LAGM01000165
Bacillota
Clostridium botulinum Prevot1662 [LAGM]
15389
15314
-
Met
CAT
[ENA]
¡û
>C161004251
CP006902
Bacillota
Clostridium botulinum Prevot_594 [CP006902]
2637492
2637417
-
Met
CAT
[Ensembl]
¡û
>W1610126207
CZXP01000138
Bacillota
Clostridioides difficile [CZXP]
841
916
+
Met
CAT
[ENA]
¡û
>W1610126217
CZXP01000148
Bacillota
Clostridioides difficile [CZXP]
138
63
-
Met
CAT
[ENA]
¡û
>W1610436247
FJUH01000578
Bacillota
Clostridioides difficile [FJUH]
393
318
-
Met
CAT
[ENA]
¡û
>W1610436265
FJUI01000030
Bacillota
Clostridioides difficile [FJUI]
183
258
+
Met
CAT
[ENA]
¡û
>W1610534589
JRHN01000066
Bacillota
Clostridioides difficile [JRHN]
543
468
-
Met
CAT
[ENA]
¡û
>W1610602686
LFPK01000013
Bacillota
Clostridium sporogenes botulinum [LFPK]
18011
17936
-
Met
CAT
[ENA]
¡û
>W1610602800
LFPM01000023
Bacillota
Clostridium sporogenes [LFPM]
17990
17915
-
Met
CAT
[ENA]
¡û
>W1610690345
LLES01000029
Bacillota
Clostridium sporogenes [LLES]
126197
126272
+
Met
CAT
[ENA]
¡û
>W1610719476
LLZV01000037
Bacillota
Clostridium sporogenes [LLZV]
125948
126023
+
Met
CAT
[ENA]
¡û
>W1610719510
LLZW01000002
Bacillota
Clostridium sporogenes [LLZW]
125888
125963
+
Met
CAT
[ENA]
¡û
>W1610927455
LUAU01000019
Bacillota
Clostridium sporogenes [LUAU]
477
552
+
Met
CAT
[ENA]
¡û
>W1710127874
CZXP01000138
Bacillota
Clostridioides difficile [CZXP]
841
916
+
Met
CAT
[ENA]
¡û
>W1710127884
CZXP01000148
Bacillota
Clostridioides difficile [CZXP]
138
63
-
Met
CAT
[ENA]
¡û
>W1710435983
FJUH01000578
Bacillota
Clostridioides difficile [FJUH]
393
318
-
Met
CAT
[ENA]
¡û
>W1710436001
FJUI01000030
Bacillota
Clostridioides difficile [FJUI]
183
258
+
Met
CAT
[ENA]
¡û
>W1710636772
JRHN01000066
Bacillota
Clostridioides difficile [JRHN]
543
468
-
Met
CAT
[ENA]
¡û
>W1710724202
LFPK01000013
Bacillota
Clostridium sporogenes botulinum [LFPK]
18011
17936
-
Met
CAT
[ENA]
¡û
>W1710724316
LFPM01000023
Bacillota
Clostridium sporogenes [LFPM]
17990
17915
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK