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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454003 (30 seq.)
>C171067995
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2037137
2037210
+
Cys
GCA
-
¡û
>WENV180052822
MPLU02327908
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
619
692
+
Cys
GCA
[ENA]
¡û
>WENV182542299
OJAY01000021
[OJAY] seawater metagenome; Sea water
82650
82723
+
Cys
GCA
[ENA]
¡û
>WENV182544025
OJBE01000015
[OJBE] seawater metagenome; Sea water
97934
98007
+
Cys
GCA
[ENA]
¡û
>WENV182546805
OJBP01004183
[OJBP] seawater metagenome; Sea water
2328
2255
-
Cys
GCA
[ENA]
¡û
>WENV182546961
OJBR01000023
[OJBR] seawater metagenome; Sea water
88835
88908
+
Cys
GCA
[ENA]
¡û
>WENV182549472
OJBY01001257
[OJBY] seawater metagenome; Sea water
3415
3488
+
Cys
GCA
[ENA]
¡û
>WENV182549844
OJBZ01000117
[OJBZ] seawater metagenome; Sea water
26926
26999
+
Cys
GCA
[ENA]
¡û
>WENV182557449
OJDK01000006
[OJDK] seawater metagenome; Sea water
87555
87628
+
Cys
GCA
[ENA]
¡û
>WENV182559534
OJDQ01000085
[OJDQ] seawater metagenome; Sea water
33930
34003
+
Cys
GCA
[ENA]
¡û
>WENV182562187
OJDZ01000045
[OJDZ] seawater metagenome; Sea water
62219
62292
+
Cys
GCA
[ENA]
¡û
>WENV182588736
OJHW01011363
[OJHW] seawater metagenome; Sea water
424
351
-
Cys
GCA
[ENA]
¡û
>WENV183055164
OLGX01000035
[OLGX] seawater metagenome; Sea water
25892
25819
-
Cys
GCA
[ENA]
¡û
>WENV183057296
OLHL01000235
[OLHL] seawater metagenome; Sea water
12476
12549
+
Cys
GCA
[ENA]
¡û
>WENV183059597
OLHV01000038
[OLHV] seawater metagenome; Sea water
25892
25819
-
Cys
GCA
[ENA]
¡û
>WENV183522174
OMOM01000422
[OMOM] seawater metagenome; Sea water
100
173
+
Cys
GCA
[ENA]
¡û
>WENV183803357
PVBE010837641
[PVBE] marine metagenome; water
560
633
+
Cys
GCA
[ENA]
¡û
>WENV170016349
AZIK01000769
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
253814
253741
-
Cys
GCA
[ENA]
¡û
>WENV170564919
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
26600
26527
-
Cys
GCA
[ENA]
¡û
>WENV170572701
FLOH01001178
[FLOH] marine metagenome; water
35505
35578
+
Cys
GCA
[ENA]
¡û
>C151013090
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1856698
1856771
+
Cys
GCA
[Ensembl]
¡û
>W2012097885
VNIL01000003
Gammaproteobacteria
Thalassolituus sp. C2-1 [VNIL]
320221
320294
+
Cys
GCA
[ENA]
¡û
>W2110188976
JABVCB010000012
Gammaproteobacteria
Thalassolituus sp. ST750PaO-4 [JABVCB]
312822
312895
+
Cys
GCA
[ENA]
¡û
>W2110716009
JAJAEL010000007
Gammaproteobacteria
Thalassolituus sp. TMPB967 [JAJAEL]
54330
54257
-
Cys
GCA
[ENA]
¡û
>W2110716069
JAJAEM010000057
Gammaproteobacteria
Thalassolituus sp. TTPB476 [JAJAEM]
54204
54131
-
Cys
GCA
[ENA]
¡û
>W2110740229
JALE01000011
Gammaproteobacteria
Thalassolituus oleivorans 4BN06-13 [JALE]
31975
31902
-
Cys
GCA
[ENA]
¡û
>C231070417
CP054475
Gammaproteobacteria
Thalassolituus hydrocarbonoclasticus alknpb1M-1 [CP054475]
2010314
2010241
-
Cys
GCA
-
¡û
>C231352907
CP094879
Gammaproteobacteria
Thalassolituus sp. C2-1 [CP094879]
2203172
2203099
-
Cys
GCA
-
¡û
>W2310024219
BSNM01000014
Gammaproteobacteria
Litoribrevibacter albus NBRC 110071 [BSNM]
177449
177522
+
Cys
GCA
[ENA]
¡û
>C131021020
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1898863
1898790
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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