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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454593 (87 seq.)
>W1711229428
LXYK01000041
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
22017
21944
-
Cys
GCA
[ENA]
¡û
>W131242035
BASI01000007
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
144121
144194
+
Cys
GCA
[ENA]
¡û
>W1711711787
MTBG01000008
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
111360
111433
+
Cys
GCA
[ENA]
¡û
>C171105936
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
901591
901518
-
Cys
GCA
-
¡û
>w011981
AALZ01000001
Alphaproteobacteria
Sulfitobacter sp. NAS-14.1 [AALZ]
36496
36421
-
Cys
GCA
[ENA]
¡û
>WENV180071721
MPLZ02256419
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2383
2456
+
Cys
GCA
[ENA]
¡û
>WENV180394373
OBPS01002611
[OBPS] marine metagenome; ENVO:00002010 seawater
2338
2411
+
Cys
GCA
[ENA]
¡û
>W08005748
ABID01000002
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
138690
138620
-
Cys
GCA
[ENA]
¡û
>W08011246
ABSK01000040
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
36905
36835
-
Cys
GCA
[ENA]
¡û
>WENV181320991
OFKJ01007277
[OFKJ] marine metagenome; sea ice
413
486
+
Cys
GCA
[ENA]
¡û
>WENV181324838
OFLH01015488
[OFLH] marine metagenome; sea ice
223
150
-
Cys
GCA
[ENA]
¡û
>W141171301
AXZR01000002
Alphaproteobacteria
Sulfitobacter pontiacus 3SOLIMAR09 [AXZR]
125
198
+
Cys
GCA
[ENA]
¡û
>WENV182542924
OJAZ01007617
[OJAZ] seawater metagenome; Sea water
343
270
-
Cys
GCA
[ENA]
¡û
>WENV182544095
OJBE01000324
[OJBE] seawater metagenome; Sea water
712
639
-
Cys
GCA
[ENA]
¡û
>WENV182546103
OJBO01000926
[OJBO] seawater metagenome; Sea water
12049
12122
+
Cys
GCA
[ENA]
¡û
>WENV182549137
OJBX01024890
[OJBX] seawater metagenome; Sea water
546
619
+
Cys
GCA
[ENA]
¡û
>WENV182555769
OJDD01000502
[OJDD] seawater metagenome; Sea water
3556
3629
+
Cys
GCA
[ENA]
¡û
>WENV182557591
OJDK01000520
[OJDK] seawater metagenome; Sea water
7068
6995
-
Cys
GCA
[ENA]
¡û
>WENV182559794
OJDQ01005256
[OJDQ] seawater metagenome; Sea water
1433
1506
+
Cys
GCA
[ENA]
¡û
>WENV182563906
OJED01002365
[OJED] seawater metagenome; Sea water
2538
2465
-
Cys
GCA
[ENA]
¡û
>WENV182567038
OJEN01000709
[OJEN] seawater metagenome; Sea water
9790
9717
-
Cys
GCA
[ENA]
¡û
>WENV182567540
OJEO01005632
[OJEO] seawater metagenome; Sea water
1576
1503
-
Cys
GCA
[ENA]
¡û
>WENV182568898
OJEX01000689
[OJEX] seawater metagenome; Sea water
2765
2692
-
Cys
GCA
[ENA]
¡û
>WENV182576312
OJFX01010049
[OJFX] seawater metagenome; Sea water
1661
1734
+
Cys
GCA
[ENA]
¡û
>WENV182581392
OJGX01004601
[OJGX] seawater metagenome; Sea water
834
907
+
Cys
GCA
[ENA]
¡û
>WENV182583708
OJHE01000416
[OJHE] seawater metagenome; Sea water
4165
4092
-
Cys
GCA
[ENA]
¡û
>WENV182588036
OJHO01001295
[OJHO] seawater metagenome; Sea water
7786
7713
-
Cys
GCA
[ENA]
¡û
>W141290283
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
2212539
2212612
+
Cys
GCA
[ENA]
¡û
>WENV183057071
OLHK01001773
[OLHK] seawater metagenome; Sea water
1308
1381
+
Cys
GCA
[ENA]
¡û
>WENV183059771
OLHV01002988
[OLHV] seawater metagenome; Sea water
2449
2376
-
Cys
GCA
[ENA]
¡û
>WENV183617627
OOEG01023505
[OOEG] marine metagenome; sea ice
342
415
+
Cys
GCA
[ENA]
¡û
>WENV183631010
OOGU01016798
[OOGU] marine metagenome; sea ice
768
695
-
Cys
GCA
[ENA]
¡û
>WENV183806975
PVBE011162046
[PVBE] marine metagenome; water
15025
15098
+
Cys
GCA
[ENA]
¡û
>WENV170015296
AZIG01001124
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
639
712
+
Cys
GCA
[ENA]
¡û
>WENV170015544
AZIH01004102
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
2156
2229
+
Cys
GCA
[ENA]
¡û
>WENV170155639
CEOG01079304
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
719
646
-
Cys
GCA
[ENA]
¡û
>WENV170266148
CERE01044017
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
63
136
+
Cys
GCA
[ENA]
¡û
>WENV170672542
LAZR01000280
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
2766
2693
-
Cys
GCA
[ENA]
¡û
>WENV170762699
LUMW01028063
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
292
365
+
Cys
GCA
[ENA]
¡û
>WENV170782021
MAAC01006462
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
46
119
+
Cys
GCA
[ENA]
¡û
>WENV170783033
MAAC01013213
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9754
9681
-
Cys
GCA
[ENA]
¡û
>WENV170783875
MAAC01019329
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11636
11563
-
Cys
GCA
[ENA]
¡û
>C181123330
CP025803
Alphaproteobacteria
Sulfitobacter sp. SK011 [CP025803]
1334479
1334406
-
Cys
GCA
-
¡û
>C181123395
CP025808
Alphaproteobacteria
Sulfitobacter sp. SK025 [CP025808]
2617407
2617334
-
Cys
GCA
-
¡û
>C191182588
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
251139
251212
+
Cys
GCA
-
¡û
>W141807905
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
2082374
2082301
-
Cys
GCA
[ENA]
¡û
>W1910443205
FWFW01000006
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
233191
233264
+
Cys
GCA
[ENA]
¡û
>W1910499776
FXYF01000006
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
291004
291077
+
Cys
GCA
[ENA]
¡û
>W1910808407
MUAV01000022
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
2196
2123
-
Cys
GCA
[ENA]
¡û
>W1810424144
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
2082374
2082301
-
Cys
GCA
[ENA]
¡û
>W1810486768
QAYC01000013
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
75883
75956
+
Cys
GCA
[ENA]
¡û
>W1810494699
QBFD01000001
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
69369
69296
-
Cys
GCA
[ENA]
¡û
>W1810735778
QOLB01000032
Alphaproteobacteria
Candidatus Halocynthiibacter alkanivorans Bin25-node5 [QOLB]
121228
121155
-
Cys
GCA
[ENA]
¡û
>C151092062
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
775695
775622
-
Cys
GCA
-
¡û
>W2010144695
BLWI01000008
Alphaproteobacteria
Sulfitobacter sp. HGT1 [BLWI]
665913
665840
-
Cys
GCA
[ENA]
¡û
>W2010406569
FWFW01000006
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
233191
233264
+
Cys
GCA
[ENA]
¡û
>W2010419479
FXYF01000006
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
291004
291077
+
Cys
GCA
[ENA]
¡û
>W2010451958
JAAEAJ010000012
Alphaproteobacteria
Rhodovulum sulfidophilum SE1 [JAAEAJ]
1497
1424
-
Cys
GCA
[ENA]
¡û
>W2010725649
JACIEI010000001
Alphaproteobacteria
Sulfitobacter undariae DSM 102234 [JACIEI]
660325
660252
-
Cys
GCA
[ENA]
¡û
>W2010727281
JACIFR010000001
Alphaproteobacteria
Sulfitobacter sp. N5S [JACIFR]
427793
427866
+
Cys
GCA
[ENA]
¡û
>W2010727867
JACIGD010000009
Alphaproteobacteria
Rhodobaca bogoriensis DSM 18756 LBB1 [JACIGD]
10367
10294
-
Cys
GCA
[ENA]
¡û
>W2011392207
RCCE01000001
Alphaproteobacteria
Litoreibacter meonggei DSM 29466 [RCCE]
740976
741049
+
Cys
GCA
[ENA]
¡û
>W2011665551
SORN01000010
Alphaproteobacteria
Rhodobaca bogoriensis DSM 18756 [SORN]
116500
116573
+
Cys
GCA
[ENA]
¡û
>W2110022225
BMFC01000004
Alphaproteobacteria
Marivita lacus CGMCC 1.12478 [BMFC]
289157
289230
+
Cys
GCA
[ENA]
¡û
>W2110447996
JAESJG010000259
Alphaproteobacteria
Rhodovulum sulfidophilum AB22 [JAESJG]
3642
3715
+
Cys
GCA
[ENA]
¡û
>W2110448013
JAESJH010000011
Alphaproteobacteria
Rhodovulum sulfidophilum AB23 [JAESJH]
716
643
-
Cys
GCA
[ENA]
¡û
>W2110639230
JAHQZS010000003
Alphaproteobacteria
Rhodobacteraceae bacterium ASV31 [JAHQZS]
181310
181237
-
Cys
GCA
[ENA]
¡û
>C201220462
CP049028
Alphaproteobacteria
Rhodobacteraceae bacterium SC52 [CP049028]
2330323
2330396
+
Cys
GCA
-
¡û
>C231181761
CP083560
Alphaproteobacteria
Sulfitobacter sp. S223 [CP083560]
1112411
1112338
-
Cys
GCA
-
¡û
>W2110746868
LGTP01000055
Alphaproteobacteria
Roseobacter litoralis B14 [LGTP]
17562
17489
-
Cys
GCA
[ENA]
¡û
>C231201435
CP084951
Alphaproteobacteria
Sulfitobacter indolifex DSM 14862 [CP084951]
872570
872497
-
Cys
GCA
-
¡û
>W2110751685
NHRZ01000013
Alphaproteobacteria
Rhodovulum sulfidophilum IM796 [NHRZ]
1709
1636
-
Cys
GCA
[ENA]
¡û
>W2110751884
NHSD01000331
Alphaproteobacteria
Rhodobaculum claviforme LMG 28126 [NHSD]
4163
4236
+
Cys
GCA
[ENA]
¡û
>C241011782
AP027373
Alphaproteobacteria
Sulfitobacter pontiacus BL28 [AP027373]
2501077
2501004
-
Cys
GCA
-
¡û
>C241276315
CP127247
Alphaproteobacteria
Parasedimentitalea psychrophila QS115 [CP127247]
2918907
2918834
-
Cys
GCA
-
¡û
>W2310023612
BSKR01000001
Alphaproteobacteria
Sulfitobacter pontiacus 191114_B17 [BSKR]
2520351
2520278
-
Cys
GCA
[ENA]
¡û
>C161001484
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
689258
689185
-
Cys
GCA
[Ensembl]
¡û
>C161071248
CP014327
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [CP014327]
2041528
2041455
-
Cys
GCA
[Ensembl]
¡û
>C161087737
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
4081989
4082062
+
Cys
GCA
-
¡û
>W1610092042
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
488358
488431
+
Cys
GCA
[ENA]
¡û
>C131005995
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
992301
992228
-
Cys
GCA
[Ensembl]
¡û
>W1611013208
LXYI01000040
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
39166
39093
-
Cys
GCA
[ENA]
¡û
>WENV078386
AAGA01004587
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
259
334
+
Cys
GCA
[ENA]
>W1710095399
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
488358
488431
+
Cys
GCA
[ENA]
¡û
>W1710543289
FNZV01000005
Alphaproteobacteria
Pacificibacter marinus [FNZV]
4663
4590
-
Cys
GCA
[ENA]
¡û
>W1710543726
FOAG01000001
Alphaproteobacteria
Roseovarius azorensis [FOAG]
9523
9450
-
Cys
GCA
[ENA]
¡û
>W1710594948
FSRP01000001
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
459490
459417
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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