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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454642 (72 seq.)
>W1710785165
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
402626
402701
+
Val
TAC
[ENA]
¡û
>W1710869475
LMJT01000008
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
5306
5231
-
Val
TAC
[ENA]
¡û
>W1710872710
LMME01000023
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
344372
344297
-
Val
TAC
[ENA]
¡û
>W1710872791
LMMG01000034
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
13389
13314
-
Val
TAC
[ENA]
¡û
>W1710872895
LMMI01000059
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
167948
168023
+
Val
TAC
[ENA]
¡û
>W1710873108
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
82122
82047
-
Val
TAC
[ENA]
¡û
>W1710873191
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
283011
282936
-
Val
TAC
[ENA]
¡û
>W1710873218
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
306386
306461
+
Val
TAC
[ENA]
¡û
>W1710873365
LMMS01000026
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
172618
172693
+
Val
TAC
[ENA]
¡û
>W1710873481
LMMU01000013
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
47931
47856
-
Val
TAC
[ENA]
¡û
>W1710873547
LMMW01000012
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
51169
51094
-
Val
TAC
[ENA]
¡û
>W1710873621
LMMX01000039
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
45727
45652
-
Val
TAC
[ENA]
¡û
>W1710873707
LMMZ01000037
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
294308
294233
-
Val
TAC
[ENA]
¡û
>W1710873807
LMNB01000031
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
112600
112525
-
Val
TAC
[ENA]
¡û
>W1710873860
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
210133
210208
+
Val
TAC
[ENA]
¡û
>W1710874040
LMNG01000033
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
168177
168252
+
Val
TAC
[ENA]
¡û
>W1710874176
LMNJ01000045
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
260708
260633
-
Val
TAC
[ENA]
¡û
>W1710874274
LMNL01000036
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
34220
34295
+
Val
TAC
[ENA]
¡û
>W1710874452
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
482166
482091
-
Val
TAC
[ENA]
¡û
>W1710874500
LMNQ01000043
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
11176
11251
+
Val
TAC
[ENA]
¡û
>W1710877773
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
209545
209620
+
Val
TAC
[ENA]
¡û
>W1710878553
LMRA01000045
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
208242
208167
-
Val
TAC
[ENA]
¡û
>W1710878639
LMRC01000033
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
49580
49505
-
Val
TAC
[ENA]
¡û
>W1710878735
LMRE01000044
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
167580
167655
+
Val
TAC
[ENA]
¡û
>W1710879196
LMRM01000023
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
26976
27051
+
Val
TAC
[ENA]
¡û
>W1711072945
LSIB01000092
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
49633
49558
-
Val
TAC
[ENA]
¡û
>W1711073771
LSIX01000546
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
611
536
-
Val
TAC
[ENA]
¡û
>W1711571766
MNAO01000256
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
7661
7586
-
Val
TAC
[ENA]
¡û
>W131159752
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
3084167
3084242
+
Val
TAC
[ENA]
¡û
>W131166759
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
1900762
1900837
+
Val
TAC
[ENA]
¡û
>C171092156
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4538666
4538591
-
Val
TAC
-
¡û
>C171115194
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4287642
4287717
+
Val
TAC
-
¡û
>W08002400
ABEX01000005
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
203332
203260
-
Val
TAC
[ENA]
¡û
>W141277772
JAEV01000006
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
63392
63317
-
Val
TAC
[ENA]
¡û
>WENV170004282
AGTN01627960
[AGTN] bioreactor metagenome; poplar biomass
314
239
-
Val
TAC
[ENA]
¢þ
>WENV170713710
LNFM01039675
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2813
2738
-
Val
TAC
[ENA]
¢þ
>C181227865
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
3169611
3169536
-
Val
TAC
-
¡û
>W141815680
JQJG01000036
Alphaproteobacteria
Methylobacterium sp. UNCCL110 [JQJG]
351
276
-
Val
TAC
[ENA]
¡û
>C09107418
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
2819697
2819772
+
Val
TAC
[Ensembl]
¡û
>C09107503
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3109465
3109540
+
Val
TAC
[Ensembl]
¡û
>C09107605
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
2547695
2547770
+
Val
TAC
[Ensembl]
¡û
>SRA1015053
SRR023845.441448
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
188
263
+
Val
TAC
[SRA]
>C161070705
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1308427
1308352
-
Val
TAC
[Ensembl]
¡û
>W121010676
AGJK01000064
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
7787
7712
-
Val
TAC
[ENA]
¡û
>W1610648971
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
402626
402701
+
Val
TAC
[ENA]
¡û
>W1610731821
LMJT01000008
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
5306
5231
-
Val
TAC
[ENA]
¡û
>W1610735056
LMME01000023
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
344372
344297
-
Val
TAC
[ENA]
¡û
>W1610735137
LMMG01000034
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
13389
13314
-
Val
TAC
[ENA]
¡û
>W1610735241
LMMI01000059
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
167948
168023
+
Val
TAC
[ENA]
¡û
>W1610735454
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
82122
82047
-
Val
TAC
[ENA]
¡û
>W1610735537
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
283011
282936
-
Val
TAC
[ENA]
¡û
>W1610735564
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
306386
306461
+
Val
TAC
[ENA]
¡û
>W1610735711
LMMS01000026
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
172618
172693
+
Val
TAC
[ENA]
¡û
>W1610735827
LMMU01000013
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
47931
47856
-
Val
TAC
[ENA]
¡û
>W1610735893
LMMW01000012
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
51169
51094
-
Val
TAC
[ENA]
¡û
>W1610735967
LMMX01000039
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
45727
45652
-
Val
TAC
[ENA]
¡û
>W1610736053
LMMZ01000037
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
294308
294233
-
Val
TAC
[ENA]
¡û
>W1610736153
LMNB01000031
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
112600
112525
-
Val
TAC
[ENA]
¡û
>W1610736206
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
210133
210208
+
Val
TAC
[ENA]
¡û
>W1610736386
LMNG01000033
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
168177
168252
+
Val
TAC
[ENA]
¡û
>W1610736522
LMNJ01000045
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
260708
260633
-
Val
TAC
[ENA]
¡û
>W1610736620
LMNL01000036
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
34220
34295
+
Val
TAC
[ENA]
¡û
>W1610736798
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
482166
482091
-
Val
TAC
[ENA]
¡û
>W1610736846
LMNQ01000043
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
11176
11251
+
Val
TAC
[ENA]
¡û
>W1610740119
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
209545
209620
+
Val
TAC
[ENA]
¡û
>W1610740899
LMRA01000045
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
208242
208167
-
Val
TAC
[ENA]
¡û
>W1610740985
LMRC01000033
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
49580
49505
-
Val
TAC
[ENA]
¡û
>W1610741081
LMRE01000044
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
167580
167655
+
Val
TAC
[ENA]
¡û
>W1610741542
LMRM01000023
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
26976
27051
+
Val
TAC
[ENA]
¡û
>W1610912205
LSIB01000092
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
49633
49558
-
Val
TAC
[ENA]
¡û
>W1610913076
LSIX01000546
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
611
536
-
Val
TAC
[ENA]
¡û
>W1710578841
FPBW01000028
Alphaproteobacteria
Methylobacterium sp. UNCCL125 [FPBW]
10756
10681
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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