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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456384 (9 seq.)
>C171057585
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
519494
519569
+
Lys
TTT
-
¡û
>C171088925
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
519347
519422
+
Lys
TTT
-
¡û
>W141700873
JMJI01000025
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
1640
1565
-
Lys
TTT
[ENA]
¡û
>SRA1014776
SRR023845.309857
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
12
87
+
Lys
TTT
[SRA]
>C151015550
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
519535
519610
+
Lys
TTT
[Ensembl]
¡û
>C151102617
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
519381
519456
+
Lys
TTT
[Ensembl]
¡û
>C151102888
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
519323
519398
+
Lys
TTT
[Ensembl]
¡û
>C151102917
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
519484
519559
+
Lys
TTT
[Ensembl]
¡û
>W11141012
AENG01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
519494
519569
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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