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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456385 (76 seq.)
>C171057589
CP017125
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [CP017125]
871343
871418
+
Ala
TGC
-
¡û
>C171088929
CP019061
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae zly1309F [CP019061]
871305
871380
+
Ala
TGC
-
¡û
>W131058748
ANFU01000024
Mycoplasmatota
Mycoplasma feriruminatoris G5847 [ANFU]
2911
2986
+
Ala
TGC
[ENA]
¡û
>W131061534
ANIV01000011
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [ANIV]
34217
34142
-
Ala
TGC
[ENA]
¡û
>W131098332
AORK01000023
Mycoplasmatota
Mycoplasma yeatsii 13926 [AORK]
47984
48059
+
Ala
TGC
[ENA]
¡û
>C013253
CP000123
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum ATCC 27343 [CP000123]
863392
863467
+
Ala
TGC
[Ensembl]
¡û
>C013858
BX293980
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. PG1 [BX293980]
932735
932810
+
Ala
TGC
[Ensembl]
¡û
>w025290
AAZK01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides LC str. GM12 [AAZK]
225633
225556
-
Ala
TGC
[ENA]
¡û
>W141170391
AXXW01000003
Mycoplasmatota
[Acholeplasma] multilocale ATCC 49900 [AXXW]
13497
13572
+
Ala
TGC
[ENA]
¡û
>W141276869
JAED01000007
Mycoplasmatota
Mesoplasma seiffertii ATCC 49495 [JAED]
32547
32622
+
Ala
TGC
[ENA]
¡û
>W141280184
JAGV01000001
Mycoplasmatota
Williamsoniiplasma somnilux ATCC 49194 [JAGV]
348874
348799
-
Ala
TGC
[ENA]
¡û
>W141450922
JFAE01000005
Mycoplasmatota
Mycoplasma mycoides subsp. capri PG3 [JFAE]
53107
53032
-
Ala
TGC
[ENA]
¡û
>W141455526
JFDO01000030
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14232 [JFDO]
3048
3123
+
Ala
TGC
[ENA]
¡û
>C181109534
CP024965
Mycoplasmatota
Williamsoniiplasma somnilux PYAN-1 [CP024965]
677328
677253
-
Ala
TGC
-
¡û
>C181115120
CP025257
Mycoplasmatota
Mesoplasma syrphidae YJS [CP025257]
744911
744836
-
Ala
TGC
-
¡û
>C181199917
CP031376
Mycoplasmatota
Spiroplasma alleghenense PLHS-1 [CP031376]
177872
177947
+
Ala
TGC
-
¡û
>C191217987
LR214938
Mycoplasmatota
Metamycoplasma salivarium NCTC10113 [LR214938]
848487
848562
+
Ala
TGC
-
¡û
>C191224065
LS483500
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483500]
861118
861193
+
Ala
TGC
-
¡û
>C191224095
LS483501
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483501]
863510
863585
+
Ala
TGC
-
¡û
>C191224125
LS483502
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483502]
861304
861379
+
Ala
TGC
-
¡û
>C191224155
LS483503
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483503]
781263
781338
+
Ala
TGC
-
¡û
>C191224185
LS483504
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483504]
861613
861688
+
Ala
TGC
-
¡û
>C191224214
LS483505
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483505]
864438
864513
+
Ala
TGC
-
¡û
>C191224244
LS483506
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483506]
857427
857502
+
Ala
TGC
-
¡û
>C191224274
LS483507
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483507]
856875
856950
+
Ala
TGC
-
¡û
>C191224302
LS483508
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483508]
849944
850019
+
Ala
TGC
-
¡û
>C191224332
LS483509
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483509]
860229
860304
+
Ala
TGC
-
¡û
>C191224362
LS483510
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483510]
855592
855667
+
Ala
TGC
-
¡û
>C191224391
LS483511
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483511]
857941
858016
+
Ala
TGC
-
¡û
>C191224421
LS483512
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483512]
865211
865286
+
Ala
TGC
-
¡û
>C191224451
LS483513
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483513]
862996
863071
+
Ala
TGC
-
¡û
>C191224481
LS483514
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483514]
865078
865153
+
Ala
TGC
-
¡û
>C191224510
LS483515
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483515]
865211
865286
+
Ala
TGC
-
¡û
>C191224540
LS483516
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483516]
855767
855842
+
Ala
TGC
-
¡û
>C191224570
LS483517
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483517]
858712
858787
+
Ala
TGC
-
¡û
>C191224600
LS483518
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483518]
865082
865157
+
Ala
TGC
-
¡û
>C191224629
LS483519
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [LS483519]
862505
862580
+
Ala
TGC
-
¡û
>C191224914
LS991954
Mycoplasmatota
Mycoplasma putrefaciens NCTC10155 [LS991954]
698600
698525
-
Ala
TGC
-
¡û
>W141700853
JMJI01000005
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 99108 [JMJI]
18093
18018
-
Ala
TGC
[ENA]
¡û
>W141701667
JMKV01000004
Mycoplasmatota
Mesoplasma syrphidae ATCC 51578 [JMKV]
93657
93582
-
Ala
TGC
[ENA]
¡û
>W141731685
JNJI01000006
Mycoplasmatota
Mesoplasma photuris ATCC 49581 [JNJI]
64084
64009
-
Ala
TGC
[ENA]
¡û
>W1910597453
LATJ01000079
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides PO-67 [LATJ]
1516
1441
-
Ala
TGC
[ENA]
¡û
>W1910598092
LAUU01000003
Mycoplasmatota
Mycoplasma leachii 6049 [LAUU]
49038
48963
-
Ala
TGC
[ENA]
¡û
>W1910598139
LAUV01000068
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B345/93 [LAUV]
1524
1449
-
Ala
TGC
[ENA]
¡û
>W1910598168
LAUW01000062
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides C425/93 [LAUW]
1597
1672
+
Ala
TGC
[ENA]
¡û
>W1910598193
LAUX01000122
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides KH3J [LAUX]
1525
1450
-
Ala
TGC
[ENA]
¡û
>W1910598205
LAUY01000022
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides str. Gemu Goffa [LAUY]
1509
1434
-
Ala
TGC
[ENA]
¡û
>SRA1015069
SRR023845.446639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
103
28
-
Ala
TGC
[SRA]
>C151014905
CP006934
Mycoplasmatota
Spiroplasma sabaudiense Ar-1343 [CP006934]
146801
146876
+
Ala
TGC
[Ensembl]
¡û
>C151015554
CP006959
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 87001 [CP006959]
871914
871989
+
Ala
TGC
[Ensembl]
¡û
>C151026413
CP007520
Mycoplasmatota
Mycoplasma yeatsii GM274B [CP007520]
690009
689934
-
Ala
TGC
[Ensembl]
¡û
>C151064913
CP010267
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides izsam_mm5713 [CP010267]
929662
929737
+
Ala
TGC
[Ensembl]
¡û
>C151094659
CP012387
Mycoplasmatota
Mycoplasma mycoides subsp. capri GM12 [CP012387]
865211
865286
+
Ala
TGC
-
¡û
>C151102621
LM995445
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae 9231-Aboms [LM995445]
871892
871967
+
Ala
TGC
[Ensembl]
¡û
>C151102892
LN515398
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae type strain: F38 [LN515398]
871365
871440
+
Ala
TGC
[Ensembl]
¡û
>C151102921
LN515399
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae ILRI181 [LN515399]
871763
871838
+
Ala
TGC
[Ensembl]
¡û
>C10109470
CP002107
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale [CP002107]
938536
938611
+
Ala
TGC
[Ensembl]
¡û
>C11114585
FR668087
Mycoplasmatota
Mycoplasma leachii 99/014/6 [FR668087]
812567
812642
+
Ala
TGC
[Ensembl]
¡û
>C11114615
CP002108
Mycoplasmatota
Mycoplasma leachii PG50 [CP002108]
848720
848795
+
Ala
TGC
[Ensembl]
¡û
>C11114799
CP001621
Mycoplasmatota
Mycoplasma mycoides [CP001621]
856571
856646
+
Ala
TGC
[Ensembl]
¡û
>C11115075
CP003021
Mycoplasmatota
Mycoplasma putrefaciens KS1 [CP003021]
698604
698529
-
Ala
TGC
[Ensembl]
¡û
>W1511508408
JXQB01000001
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum GM508D [JXQB]
624928
624853
-
Ala
TGC
[ENA]
¡û
>W11141018
AENG01000002
Mycoplasmatota
Mycoplasma capricolum subsp. capripneumoniae M1601 [AENG]
109845
109920
+
Ala
TGC
[ENA]
¡û
>W1511565139
LAEW01000001
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides B237 [LAEW]
934637
934712
+
Ala
TGC
[ENA]
¡û
>W1511565170
LAEX01000007
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Afade [LAEX]
325376
325451
+
Ala
TGC
[ENA]
¡û
>W1511594889
LBMF01000007
Mycoplasmatota
Mycoplasma capricolum subsp. capricolum 14DL0024 [LBMF]
111436
111511
+
Ala
TGC
[ENA]
¡û
>W1511691356
LFYS01000006
Mycoplasmatota
Mycoplasma sp. HU2014 [LFYS]
4738
4663
-
Ala
TGC
[ENA]
¡û
>C121001657
CP001668
Mycoplasmatota
Mycoplasma mycoides [CP001668]
862842
862917
+
Ala
TGC
-
¡û
>C121016877
FQ377874
Mycoplasmatota
Mycoplasma mycoides subsp. capri LC str. 95010 [FQ377874]
928534
928609
+
Ala
TGC
[Ensembl]
¡û
>C161033045
CP011260
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben1 [CP011260]
895263
895338
+
Ala
TGC
-
¡û
>C161033074
CP011261
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben50 [CP011261]
909302
909377
+
Ala
TGC
-
¡û
>C161033103
CP011262
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben181 [CP011262]
894571
894646
+
Ala
TGC
-
¡û
>C161033133
CP011263
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben326 [CP011263]
886607
886682
+
Ala
TGC
-
¡û
>C161033162
CP011264
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides Ben468 [CP011264]
850284
850359
+
Ala
TGC
-
¡û
>C161071668
CP014346
Mycoplasmatota
Mycoplasma mycoides subsp. mycoides T1/44 [CP014346]
394717
394642
-
Ala
TGC
[Ensembl]
¡û
>C131013519
CP004357
Mycoplasmatota
Mycoplasma putrefaciens Mput9231 [CP004357]
132274
132349
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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