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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456494 (172 seq.)
>W1710858977
LMBR01000011
Chlorobiota
Chlorobium limicola [LMBR]
11139
11066
-
Ala
GGC
[ENA]
¡û
>W1711136052
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
321453
321526
+
Ala
GGC
[ENA]
¡û
>W1711167309
LVWG01000022
Chlorobiota
Pelodictyon luteolum [LVWG]
75431
75356
-
Ala
GGC
[ENA]
¡û
>W1711626099
MPJE01000083
Chlorobiota
Chlorobium sp. KB01 [MPJE]
28675
28750
+
Ala
GGC
[ENA]
¡û
>C171049459
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1867398
1867471
+
Ala
GGC
-
¡û
>C171060594
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
338486
338413
-
Ala
GGC
-
¡û
>C171114026
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
654582
654509
-
Ala
GGC
-
¡û
>C005321
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
614771
614696
-
Ala
GGC
[Ensembl]
¡û
>C006597
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2296966
2297038
+
Ala
GGC
[Ensembl]
¡û
>C007047
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
331299
331227
-
Ala
GGC
[Ensembl]
¡û
>C016773
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
503481
503406
-
Ala
GGC
[Ensembl]
¡û
>C018278
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
558924
558852
-
Ala
GGC
[Ensembl]
¡û
>w018024
AASE01000001
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
182622
182697
+
Ala
GGC
[ENA]
¡û
>w007177
AAIJ01000021
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
4119
4044
-
Ala
GGC
[ENA]
¡û
>w006126
AAHJ01000049
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
11044
10969
-
Ala
GGC
[ENA]
¡û
>WENV181232303
OFEN01000006
[OFEN] coral metagenome; NA
45791
45864
+
Ala
GGC
[ENA]
¢þ
>WENV181233229
OFES01000015
[OFES] coral metagenome; NA
103833
103906
+
Ala
GGC
[ENA]
¢þ
>WENV181303844
OFHR01000001
[OFHR] coral metagenome; NA
113554
113481
-
Ala
GGC
[ENA]
¢þ
>C08003504
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
1945433
1945506
+
Ala
GGC
[Ensembl]
¡û
>C08003602
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1883704
1883779
+
Ala
GGC
[Ensembl]
¡û
>C08003830
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
893973
893898
-
Ala
GGC
[Ensembl]
¡û
>C08007704
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2361560
2361633
+
Ala
GGC
[Ensembl]
¡û
>C08007170
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
1861725
1861798
+
Ala
GGC
[Ensembl]
¡û
>WENV183514375
OMKS01017784
[OMKS] sediment metagenome; hot spring sediment
3166
3239
+
Ala
GGC
[ENA]
¢þ
>WENV170597639
FUWD010009133
[FUWD] metagenome; unknown
651
578
-
Ala
GGC
[ENA]
¢þ
>WENV170613627
FUWD012815305
[FUWD] metagenome; unknown
11141
11216
+
Ala
GGC
[ENA]
¢þ
>WENV170613646
FUWD012815660
[FUWD] metagenome; unknown
2385
2312
-
Ala
GGC
[ENA]
¢þ
>WENV170619460
FUWD013014641
[FUWD] metagenome; unknown
3174
3247
+
Ala
GGC
[ENA]
¢þ
>WENV170627545
FUWD013233372
[FUWD] metagenome; unknown
3174
3247
+
Ala
GGC
[ENA]
¢þ
>C181068803
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
567422
567349
-
Ala
GGC
-
¡û
>W09102636
AAIB01000001
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
33777
33704
-
Ala
GGC
[ENA]
¡û
>W09103342
AAJD01000002
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
255128
255055
-
Ala
GGC
[ENA]
¡û
>W1810062204
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
593155
593082
-
Ala
GGC
[ENA]
¡û
>W1810062249
PDNY01000061
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
6157
6230
+
Ala
GGC
[ENA]
¡û
>W1810062270
PDNZ01000004
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
267059
267132
+
Ala
GGC
[ENA]
¡û
>SRA1019998
SRR035083.39088
454 Sequencing (SRP001804)
345
418
+
Ala
GGC
[SRA]
>SRA1020035
SRR035083.45147
454 Sequencing (SRP001804)
474
401
-
Ala
GGC
[SRA]
>SRA1020129
SRR035083.60789
454 Sequencing (SRP001804)
29
102
+
Ala
GGC
[SRA]
>SRA1020143
SRR035083.63422
454 Sequencing (SRP001804)
310
237
-
Ala
GGC
[SRA]
>SRA1020154
SRR035083.64144
454 Sequencing (SRP001804)
8
81
+
Ala
GGC
[SRA]
>SRA1020161
SRR035083.64939
454 Sequencing (SRP001804)
362
289
-
Ala
GGC
[SRA]
>SRA1020199
SRR035083.73413
454 Sequencing (SRP001804)
138
65
-
Ala
GGC
[SRA]
>SRA1020232
SRR035083.78945
454 Sequencing (SRP001804)
21
94
+
Ala
GGC
[SRA]
>SRA1020292
SRR035083.90936
454 Sequencing (SRP001804)
189
116
-
Ala
GGC
[SRA]
>SRA1020374
SRR035083.103572
454 Sequencing (SRP001804)
183
110
-
Ala
GGC
[SRA]
>SRA1020407
SRR035083.110821
454 Sequencing (SRP001804)
134
61
-
Ala
GGC
[SRA]
>SRA1020529
SRR035083.130758
454 Sequencing (SRP001804)
479
406
-
Ala
GGC
[SRA]
>SRA1020564
SRR035083.135663
454 Sequencing (SRP001804)
408
335
-
Ala
GGC
[SRA]
>SRA1020633
SRR035083.143849
454 Sequencing (SRP001804)
403
330
-
Ala
GGC
[SRA]
>SRA1020654
SRR035083.147450
454 Sequencing (SRP001804)
165
92
-
Ala
GGC
[SRA]
>SRA1020687
SRR035083.151575
454 Sequencing (SRP001804)
148
75
-
Ala
GGC
[SRA]
>SRA1020755
SRR035083.160087
454 Sequencing (SRP001804)
238
311
+
Ala
GGC
[SRA]
>SRA1020802
SRR035083.166880
454 Sequencing (SRP001804)
401
328
-
Ala
GGC
[SRA]
>SRA1020897
SRR035083.180820
454 Sequencing (SRP001804)
143
216
+
Ala
GGC
[SRA]
>SRA1020906
SRR035083.182150
454 Sequencing (SRP001804)
493
420
-
Ala
GGC
[SRA]
>SRA1020999
SRR035083.195302
454 Sequencing (SRP001804)
239
312
+
Ala
GGC
[SRA]
>SRA1021063
SRR035083.204599
454 Sequencing (SRP001804)
123
196
+
Ala
GGC
[SRA]
>SRA1021131
SRR035083.212840
454 Sequencing (SRP001804)
108
181
+
Ala
GGC
[SRA]
>SRA1021219
SRR035083.225576
454 Sequencing (SRP001804)
190
117
-
Ala
GGC
[SRA]
>SRA1021368
SRR035083.250965
454 Sequencing (SRP001804)
188
261
+
Ala
GGC
[SRA]
>SRA1021416
SRR035083.255971
454 Sequencing (SRP001804)
26
99
+
Ala
GGC
[SRA]
>SRA1021421
SRR035083.256266
454 Sequencing (SRP001804)
124
51
-
Ala
GGC
[SRA]
>SRA1021437
SRR035083.258253
454 Sequencing (SRP001804)
5
78
+
Ala
GGC
[SRA]
>SRA1021451
SRR035083.260669
454 Sequencing (SRP001804)
340
413
+
Ala
GGC
[SRA]
>SRA1021454
SRR035083.260939
454 Sequencing (SRP001804)
410
337
-
Ala
GGC
[SRA]
>SRA1021547
SRR035083.271807
454 Sequencing (SRP001804)
463
390
-
Ala
GGC
[SRA]
>SRA1021628
SRR035083.283566
454 Sequencing (SRP001804)
203
276
+
Ala
GGC
[SRA]
>SRA1021701
SRR035083.294342
454 Sequencing (SRP001804)
166
93
-
Ala
GGC
[SRA]
>SRA1021803
SRR035083.312128
454 Sequencing (SRP001804)
149
222
+
Ala
GGC
[SRA]
>SRA1021870
SRR035083.321414
454 Sequencing (SRP001804)
124
51
-
Ala
GGC
[SRA]
>SRA1021880
SRR035083.323151
454 Sequencing (SRP001804)
426
353
-
Ala
GGC
[SRA]
>SRA1021891
SRR035083.325468
454 Sequencing (SRP001804)
73
146
+
Ala
GGC
[SRA]
>SRA1021981
SRR035083.334403
454 Sequencing (SRP001804)
511
436
-
Ala
GGC
[SRA]
>SRA1022010
SRR035083.338548
454 Sequencing (SRP001804)
195
267
+
Ala
GGC
[SRA]
>SRA1022060
SRR035083.347084
454 Sequencing (SRP001804)
335
408
+
Ala
GGC
[SRA]
>SRA1022104
SRR035083.354223
454 Sequencing (SRP001804)
284
211
-
Ala
GGC
[SRA]
>SRA1022304
SRR035083.385541
454 Sequencing (SRP001804)
121
194
+
Ala
GGC
[SRA]
>SRA1022335
SRR035083.391708
454 Sequencing (SRP001804)
242
315
+
Ala
GGC
[SRA]
>SRA1022398
SRR035083.400138
454 Sequencing (SRP001804)
338
411
+
Ala
GGC
[SRA]
>SRA1022434
SRR035083.404810
454 Sequencing (SRP001804)
424
351
-
Ala
GGC
[SRA]
>SRA1022568
SRR035083.425762
454 Sequencing (SRP001804)
362
435
+
Ala
GGC
[SRA]
>SRA1022593
SRR035083.430177
454 Sequencing (SRP001804)
280
207
-
Ala
GGC
[SRA]
>SRA1022611
SRR035083.432148
454 Sequencing (SRP001804)
428
355
-
Ala
GGC
[SRA]
>SRA1022621
SRR035083.434007
454 Sequencing (SRP001804)
374
447
+
Ala
GGC
[SRA]
>SRA1022687
SRR035083.442220
454 Sequencing (SRP001804)
403
330
-
Ala
GGC
[SRA]
>SRA1022701
SRR035083.444010
454 Sequencing (SRP001804)
260
187
-
Ala
GGC
[SRA]
>SRA1022807
SRR035083.464044
454 Sequencing (SRP001804)
21
94
+
Ala
GGC
[SRA]
>SRA1022814
SRR035083.466229
454 Sequencing (SRP001804)
400
327
-
Ala
GGC
[SRA]
>SRA1022900
SRR035083.482374
454 Sequencing (SRP001804)
195
122
-
Ala
GGC
[SRA]
>SRA1022902
SRR035083.482474
454 Sequencing (SRP001804)
122
49
-
Ala
GGC
[SRA]
>SRA1022912
SRR035083.485297
454 Sequencing (SRP001804)
2
75
+
Ala
GGC
[SRA]
>SRA1022971
SRR035083.497739
454 Sequencing (SRP001804)
176
249
+
Ala
GGC
[SRA]
>SRA1022974
SRR035083.499030
454 Sequencing (SRP001804)
119
46
-
Ala
GGC
[SRA]
>SRA1031108
SRR035087.374994
454 Sequencing (SRP001808)
345
272
-
Ala
GGC
[SRA]
>SRA1032320
SRR035087.604511
454 Sequencing (SRP001808)
316
243
-
Ala
GGC
[SRA]
>SRA1032338
SRR035087.608511
454 Sequencing (SRP001808)
258
185
-
Ala
GGC
[SRA]
>SRA1032833
SRR035088.111646
454 Sequencing (SRP001809)
53
126
+
Ala
GGC
[SRA]
>SRA1033020
SRR035088.153038
454 Sequencing (SRP001809)
318
391
+
Ala
GGC
[SRA]
>SRA1033631
SRR035088.308389
454 Sequencing (SRP001809)
383
310
-
Ala
GGC
[SRA]
>SRA1036962
SRR035090.47433
454 Sequencing (SRP001811)
84
157
+
Ala
GGC
[SRA]
>SRA1037024
SRR035090.60730
454 Sequencing (SRP001811)
152
79
-
Ala
GGC
[SRA]
>SRA1037147
SRR035090.81967
454 Sequencing (SRP001811)
82
155
+
Ala
GGC
[SRA]
>SRA1037167
SRR035090.87181
454 Sequencing (SRP001811)
86
159
+
Ala
GGC
[SRA]
>SRA1037176
SRR035090.87904
454 Sequencing (SRP001811)
334
261
-
Ala
GGC
[SRA]
>SRA1037227
SRR035090.96962
454 Sequencing (SRP001811)
245
318
+
Ala
GGC
[SRA]
>SRA1037289
SRR035090.107600
454 Sequencing (SRP001811)
198
271
+
Ala
GGC
[SRA]
>SRA1037364
SRR035090.122958
454 Sequencing (SRP001811)
194
121
-
Ala
GGC
[SRA]
>SRA1037397
SRR035090.128470
454 Sequencing (SRP001811)
262
189
-
Ala
GGC
[SRA]
>SRA1037411
SRR035090.129983
454 Sequencing (SRP001811)
198
271
+
Ala
GGC
[SRA]
>SRA1037579
SRR035090.157863
454 Sequencing (SRP001811)
86
13
-
Ala
GGC
[SRA]
>SRA1037600
SRR035090.160908
454 Sequencing (SRP001811)
43
116
+
Ala
GGC
[SRA]
>SRA1037738
SRR035090.184810
454 Sequencing (SRP001811)
185
112
-
Ala
GGC
[SRA]
>SRA1037895
SRR035090.215002
454 Sequencing (SRP001811)
92
165
+
Ala
GGC
[SRA]
>SRA1037924
SRR035090.219220
454 Sequencing (SRP001811)
149
222
+
Ala
GGC
[SRA]
>SRA1038014
SRR035090.233902
454 Sequencing (SRP001811)
170
243
+
Ala
GGC
[SRA]
>SRA1038019
SRR035090.234633
454 Sequencing (SRP001811)
8
81
+
Ala
GGC
[SRA]
>SRA1038022
SRR035090.235017
454 Sequencing (SRP001811)
181
254
+
Ala
GGC
[SRA]
>SRA1038054
SRR035090.239548
454 Sequencing (SRP001811)
483
410
-
Ala
GGC
[SRA]
>SRA1038126
SRR035090.249723
454 Sequencing (SRP001811)
47
120
+
Ala
GGC
[SRA]
>SRA1038180
SRR035090.259733
454 Sequencing (SRP001811)
303
376
+
Ala
GGC
[SRA]
>SRA1038198
SRR035090.263745
454 Sequencing (SRP001811)
55
128
+
Ala
GGC
[SRA]
>SRA1038242
SRR035090.269778
454 Sequencing (SRP001811)
76
149
+
Ala
GGC
[SRA]
>SRA1038249
SRR035090.272836
454 Sequencing (SRP001811)
516
443
-
Ala
GGC
[SRA]
>SRA1038465
SRR035090.310848
454 Sequencing (SRP001811)
437
364
-
Ala
GGC
[SRA]
>SRA1038498
SRR035090.315916
454 Sequencing (SRP001811)
71
144
+
Ala
GGC
[SRA]
>SRA1038504
SRR035090.316568
454 Sequencing (SRP001811)
313
240
-
Ala
GGC
[SRA]
>SRA1038531
SRR035090.321342
454 Sequencing (SRP001811)
92
165
+
Ala
GGC
[SRA]
>SRA1038537
SRR035090.323778
454 Sequencing (SRP001811)
365
438
+
Ala
GGC
[SRA]
>SRA1038796
SRR035090.367469
454 Sequencing (SRP001811)
244
171
-
Ala
GGC
[SRA]
>SRA1038799
SRR035090.368352
454 Sequencing (SRP001811)
273
346
+
Ala
GGC
[SRA]
>SRA1038885
SRR035090.387770
454 Sequencing (SRP001811)
364
437
+
Ala
GGC
[SRA]
>SRA1038936
SRR035090.397556
454 Sequencing (SRP001811)
147
220
+
Ala
GGC
[SRA]
>SRA1038987
SRR035090.403862
454 Sequencing (SRP001811)
243
170
-
Ala
GGC
[SRA]
>SRA1039114
SRR035090.428397
454 Sequencing (SRP001811)
313
385
+
Ala
GGC
[SRA]
>SRA1039323
SRR035090.466877
454 Sequencing (SRP001811)
44
117
+
Ala
GGC
[SRA]
>SRA1039344
SRR035090.473232
454 Sequencing (SRP001811)
48
121
+
Ala
GGC
[SRA]
>SRA1039345
SRR035090.473308
454 Sequencing (SRP001811)
236
163
-
Ala
GGC
[SRA]
>SRA1039387
SRR035090.481979
454 Sequencing (SRP001811)
8
81
+
Ala
GGC
[SRA]
>SRA1039388
SRR035090.482464
454 Sequencing (SRP001811)
193
265
+
Ala
GGC
[SRA]
>SRA1039422
SRR035090.488054
454 Sequencing (SRP001811)
239
312
+
Ala
GGC
[SRA]
>SRA1039431
SRR035090.490012
454 Sequencing (SRP001811)
242
169
-
Ala
GGC
[SRA]
>SRA1039465
SRR035090.497785
454 Sequencing (SRP001811)
316
243
-
Ala
GGC
[SRA]
>SRA1039551
SRR035090.515156
454 Sequencing (SRP001811)
40
113
+
Ala
GGC
[SRA]
>SRA1039679
SRR035090.542903
454 Sequencing (SRP001811)
47
120
+
Ala
GGC
[SRA]
>SRA1039712
SRR035090.552287
454 Sequencing (SRP001811)
70
143
+
Ala
GGC
[SRA]
>SRA1039763
SRR035090.562669
454 Sequencing (SRP001811)
8
81
+
Ala
GGC
[SRA]
>SRA1039812
SRR035090.575448
454 Sequencing (SRP001811)
412
339
-
Ala
GGC
[SRA]
>SRA1039879
SRR035090.590374
454 Sequencing (SRP001811)
46
119
+
Ala
GGC
[SRA]
>SRA1039903
SRR035090.597616
454 Sequencing (SRP001811)
45
118
+
Ala
GGC
[SRA]
>SRA1039936
SRR035090.607835
454 Sequencing (SRP001811)
64
137
+
Ala
GGC
[SRA]
>SRA1041040
SRR035091.186470
454 Sequencing (SRP001812)
86
13
-
Ala
GGC
[SRA]
>SRA1041114
SRR035091.198698
454 Sequencing (SRP001812)
405
332
-
Ala
GGC
[SRA]
>SRA1041367
SRR035091.233294
454 Sequencing (SRP001812)
16
89
+
Ala
GGC
[SRA]
>SRA1045413
SRR035093.88361
454 Sequencing (SRP001814)
83
10
-
Ala
GGC
[SRA]
>SRA1047507
SRR035093.560476
454 Sequencing (SRP001814)
114
187
+
Ala
GGC
[SRA]
>SRA1049179
SRR035095.33609
454 Sequencing (SRP001816)
332
405
+
Ala
GGC
[SRA]
>SRA1049565
SRR035095.96669
454 Sequencing (SRP001816)
198
271
+
Ala
GGC
[SRA]
>SRA1053931
SRR035099.5925
454 Sequencing (SRP001820)
138
211
+
Ala
GGC
[SRA]
>SRA1053986
SRR035099.26383
454 Sequencing (SRP001820)
249
322
+
Ala
GGC
[SRA]
>SRA1054107
SRR035099.58840
454 Sequencing (SRP001820)
245
172
-
Ala
GGC
[SRA]
>SRA1054264
SRR035099.95412
454 Sequencing (SRP001820)
326
399
+
Ala
GGC
[SRA]
>SRA1054567
SRR035099.164908
454 Sequencing (SRP001820)
44
117
+
Ala
GGC
[SRA]
>SRA1054597
SRR035099.170439
454 Sequencing (SRP001820)
164
91
-
Ala
GGC
[SRA]
>SRA1054628
SRR035099.177609
454 Sequencing (SRP001820)
451
378
-
Ala
GGC
[SRA]
>SRA1054639
SRR035099.180799
454 Sequencing (SRP001820)
310
237
-
Ala
GGC
[SRA]
>SRA1054671
SRR035099.185166
454 Sequencing (SRP001820)
144
217
+
Ala
GGC
[SRA]
>SRA1054713
SRR035099.193874
454 Sequencing (SRP001820)
306
233
-
Ala
GGC
[SRA]
>SRA1054784
SRR035099.212367
454 Sequencing (SRP001820)
105
32
-
Ala
GGC
[SRA]
>SRA1054840
SRR035099.228179
454 Sequencing (SRP001820)
145
218
+
Ala
GGC
[SRA]
>W1610721323
LMBR01000011
Chlorobiota
Chlorobium limicola [LMBR]
11139
11066
-
Ala
GGC
[ENA]
¡û
>W1610947172
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
321453
321526
+
Ala
GGC
[ENA]
¡û
>W1610977640
LVWG01000022
Chlorobiota
Pelodictyon luteolum [LVWG]
75431
75356
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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