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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456861 (35 seq.)
>W131180772
ARNJ01000065
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
193601
193528
-
Gly
CCC
[ENA]
¡û
>W1711377551
MDZA01000202
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
1145
1218
+
Gly
CCC
[ENA]
¡û
>W1711377609
MDZB01000121
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
575
502
-
Gly
CCC
[ENA]
¡û
>W1711377647
MDZC01000076
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
21887
21960
+
Gly
CCC
[ENA]
¡û
>W1711726865
MTSE01000002
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
129855
129780
-
Gly
CCC
[ENA]
¡û
>W1712105555
NIRR01000001
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
124303
124376
+
Gly
CCC
[ENA]
¡û
>WENV181304857
OFID01002641
[OFID] marine metagenome; sea ice
316
389
+
Gly
CCC
[ENA]
¢þ
>WENV170993999
MWWC01073418
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
375
302
-
Gly
CCC
[ENA]
¢þ
>WENV170994000
MWWC01073418
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
115
42
-
Gly
CCC
[ENA]
¢þ
>WENV170994059
MWWD01006220
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
585
658
+
Gly
CCC
[ENA]
¢þ
>WENV170999704
MWWK01156384
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
202
129
-
Gly
CCC
[ENA]
¢þ
>C181175087
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2984804
2984877
+
Gly
CCC
-
¡û
>C191154901
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
624431
624358
-
Gly
CCC
-
¡û
>C191183815
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
2797390
2797317
-
Gly
CCC
-
¡û
>W1910547386
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
697573
697646
+
Gly
CCC
[ENA]
¡û
>W1911788130
QYCN01000001
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
170280
170353
+
Gly
CCC
[ENA]
¡û
>W1810089896
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
283035
282962
-
Gly
CCC
[ENA]
¡û
>W1810912361
QVLT01000001
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
197451
197378
-
Gly
CCC
[ENA]
¡û
>SRA1015072
SRR023845.448261
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
158
85
-
Gly
CCC
[SRA]
>SRA1015119
SRR023845.466722
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
227
154
-
Gly
CCC
[SRA]
>SRA1015128
SRR023845.470498
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
95
168
+
Gly
CCC
[SRA]
>SRA1015379
SRR023846.36560
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
253
180
-
Gly
CCC
[SRA]
>C151009430
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2619605
2619532
-
Gly
CCC
[Ensembl]
¡û
>C151017361
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4097441
4097514
+
Gly
CCC
[Ensembl]
¡û
>C151063995
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3668533
3668606
+
Gly
CCC
[Ensembl]
¡û
>W1511543317
JZIR01000059
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
14482
14409
-
Gly
CCC
[ENA]
¡û
>W1511582964
LATM01000053
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
14932
15005
+
Gly
CCC
[ENA]
¡û
>C161061539
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1381786
1381861
+
Gly
CCC
[Ensembl]
¡û
>C161070725
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4222717
4222790
+
Gly
CCC
[Ensembl]
¡û
>W1710530551
FNOV01000003
Bacteroidota
Hymenobacter psychrophilus [FNOV]
272401
272328
-
Gly
CCC
[ENA]
¡û
>W1710553559
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
483970
484043
+
Gly
CCC
[ENA]
¡û
>W1710573736
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
189627
189554
-
Gly
CCC
[ENA]
¡û
>W1710587455
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
612255
612328
+
Gly
CCC
[ENA]
¡û
>W1710590101
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
62054
61981
-
Gly
CCC
[ENA]
¡û
>W1710605416
FWWW01000070
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
144537
144464
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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