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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456865 (38 seq.)
>W1710889298
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
270489
270414
-
Gln
TTG
[ENA]
¡û
>W131180738
ARNJ01000023
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
11459
11384
-
Gln
TTG
[ENA]
¡û
>W131215978
ATVL01000008
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
519887
519962
+
Gln
TTG
[ENA]
¡û
>W1711377606
MDZB01000114
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
22204
22279
+
Gln
TTG
[ENA]
¡û
>W1711377648
MDZC01000079
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
120502
120427
-
Gln
TTG
[ENA]
¡û
>W1711726876
MTSE01000007
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
109214
109141
-
Gln
TTG
[ENA]
¡û
>W1711767891
MVBC01000012
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
99548
99623
+
Gln
TTG
[ENA]
¡û
>W1712105573
NIRR01000009
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
125083
125156
+
Gln
TTG
[ENA]
¡û
>WENV170956777
MJUP01219992
[MJUP] soil metagenome; viral particles from soil sample MGM
333
408
+
Gln
TTG
[ENA]
¢þ
>WENV170997674
MWWG01236324
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
161
86
-
Gln
TTG
[ENA]
¢þ
>C191087860
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
2207958
2208033
+
Gln
TTG
-
¡û
>C191154883
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
3814269
3814342
+
Gln
TTG
-
¡û
>C191183787
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
1139234
1139307
+
Gln
TTG
-
¡û
>W141734721
JNLX01000131
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
116156
116231
+
Gln
TTG
[ENA]
¡û
>W1911788170
QYCN01000073
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
4600
4526
-
Gln
TTG
[ENA]
¡û
>W1810089888
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
421795
421721
-
Gln
TTG
[ENA]
¡û
>W1810625906
QHKM01000004
Bacteroidota
Hymenobacter edaphi NL [QHKM]
40170
40095
-
Gln
TTG
[ENA]
¡û
>W1810678970
QKNS01000004
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
229619
229693
+
Gln
TTG
[ENA]
¡û
>W1810701990
QMFY01000003
Bacteroidota
Pseudochryseolinea flava SDU1-6 [QMFY]
157981
158054
+
Gln
TTG
[ENA]
¡û
>SRA1014682
SRR023845.261094
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
121
46
-
Gln
TTG
[SRA]
>SRA1014908
SRR023845.375845
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
269
194
-
Gln
TTG
[SRA]
>SRA1016347
SRR023846.460949
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
163
+
Gln
TTG
[SRA]
>SRA1016353
SRR023846.461497
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
266
191
-
Gln
TTG
[SRA]
>SRA1016416
SRR023846.487627
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
163
+
Gln
TTG
[SRA]
>C151009402
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1021729
1021804
+
Gln
TTG
[Ensembl]
¡û
>C151017389
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
810083
810008
-
Gln
TTG
[Ensembl]
¡û
>C151064012
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
1271148
1271073
-
Gln
TTG
[Ensembl]
¡û
>C151096205
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2513777
2513852
+
Gln
TTG
-
¡û
>W1511582958
LATM01000017
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
39937
40012
+
Gln
TTG
[ENA]
¡û
>C161061537
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
69840
69915
+
Gln
TTG
[Ensembl]
¡û
>W1610749676
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
270489
270414
-
Gln
TTG
[ENA]
¡û
>W1710530547
FNOV01000003
Bacteroidota
Hymenobacter psychrophilus [FNOV]
3705
3778
+
Gln
TTG
[ENA]
¡û
>W1710553569
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
726926
726853
-
Gln
TTG
[ENA]
¡û
>W1710573745
FOXS01000004
Bacteroidota
Hymenobacter arizonensis [FOXS]
388897
388822
-
Gln
TTG
[ENA]
¡û
>W1710587470
FQYN01000004
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
351416
351489
+
Gln
TTG
[ENA]
¡û
>W1710590120
FRAS01000019
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
63369
63444
+
Gln
TTG
[ENA]
¡û
>W1710605403
FWWW01000051
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
27900
27827
-
Gln
TTG
[ENA]
¡û
>W1710610152
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
2488442
2488517
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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