This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457131 (83 seq.)
>W1710874049
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011509
1011438
-
Cys
GCA
[ENA]
¡û
>W131219705
ATYU01000001
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
120435
120364
-
Cys
GCA
[ENA]
¡û
>C171130933
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
719613
719684
+
Cys
GCA
-
¡û
>WENV180357176
OBNM01044841
[OBNM] marine metagenome; none
309
238
-
Cys
GCA
[ENA]
¡û
>WENV180394094
OBPR01061838
[OBPR] marine metagenome; ENVO:00002042
243
170
-
Cys
GCA
[ENA]
¡û
>WENV181328753
OFLV01000003
[OFLV] metagenome; faeces
465213
465142
-
Cys
GCA
[ENA]
¡û
>WENV181329279
OFLW01000158
[OFLW] metagenome; faeces
9906
9977
+
Cys
GCA
[ENA]
¡û
>WENV181378102
OFRA01075076
[OFRA] wastewater metagenome; Lake Maggiore Verbania
468
397
-
Cys
GCA
[ENA]
¡û
>WENV181395525
OFSA01001599
[OFSA] freshwater metagenome; Freshwater Lake
312
383
+
Cys
GCA
[ENA]
¡û
>WENV181804597
OGSF01005169
[OGSF] human gut metagenome; fecal sample 3 from infant 5
443
514
+
Cys
GCA
[ENA]
¡û
>WENV181814502
OGTG01000295
[OGTG] human gut metagenome; fecal sample 1 from infant 4
8294
8223
-
Cys
GCA
[ENA]
¡û
>WENV181818481
OGTS01004278
[OGTS] human gut metagenome; fecal sample 4 from infant 4
826
755
-
Cys
GCA
[ENA]
¡û
>WENV170601514
FUWD010177601
[FUWD] metagenome; unknown
380
309
-
Cys
GCA
[ENA]
¡û
>C191036543
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
1552522
1552593
+
Cys
GCA
-
¡û
>C191073497
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
1945378
1945307
-
Cys
GCA
-
¡û
>C191211306
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
409639
409710
+
Cys
GCA
-
¡û
>SRA1005149
SRR006907.64028
metagenomic water samples (SRP000427)
102
173
+
Cys
GCA
[SRA]
>W2010083028
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
823229
823158
-
Cys
GCA
[ENA]
¡û
>W2010472507
JAAHFK010000004
Actinomycetota
Mumia sp. ZJ430 [JAAHFK]
682918
682847
-
Cys
GCA
[ENA]
¡û
>W2010669182
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
979283
979212
-
Cys
GCA
[ENA]
¡û
>W2010744210
JACKXE010000002
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
126694
126765
+
Cys
GCA
[ENA]
¡û
>W2010916708
MVCC01000001
Actinomycetota
Cutibacterium acnes subsp. acnes 12-89 [MVCC]
353220
353291
+
Cys
GCA
[ENA]
¡û
>W2010934520
NBIQ01000001
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
337727
337798
+
Cys
GCA
[ENA]
¡û
>W2011033131
NQMA01000001
Actinomycetota
Cutibacterium acnes P16-206 [NQMA]
218618
218689
+
Cys
GCA
[ENA]
¡û
>W2011139440
NXAS01000001
Actinomycetota
Cutibacterium acnes P15-180 [NXAS]
353433
353504
+
Cys
GCA
[ENA]
¡û
>W2011176744
PCND01000002
Actinomycetota
Cutibacterium acnes T14076 [PCND]
352953
353024
+
Cys
GCA
[ENA]
¡û
>W2011177202
PCNN01000002
Actinomycetota
Cutibacterium acnes T20758 [PCNN]
357365
357436
+
Cys
GCA
[ENA]
¡û
>W2011177278
PCNP01000001
Actinomycetota
Cutibacterium acnes T29350 [PCNP]
357305
357376
+
Cys
GCA
[ENA]
¡û
>W2011177382
PCNR01000002
Actinomycetota
Cutibacterium acnes T29420 [PCNR]
357378
357449
+
Cys
GCA
[ENA]
¡û
>W2011177471
PCNT01000002
Actinomycetota
Cutibacterium acnes T35709 [PCNT]
352941
353012
+
Cys
GCA
[ENA]
¡û
>W2011177515
PCNU01000002
Actinomycetota
Cutibacterium acnes T35743 [PCNU]
244215
244286
+
Cys
GCA
[ENA]
¡û
>W2011177618
PCNW01000002
Actinomycetota
Cutibacterium acnes T36318 [PCNW]
239380
239451
+
Cys
GCA
[ENA]
¡û
>W2011258337
QJHQ01000001
Actinomycetota
Cutibacterium acnes T45496 [QJHQ]
526556
526485
-
Cys
GCA
[ENA]
¡û
>W2011258462
QJHT01000001
Actinomycetota
Cutibacterium acnes T29015 [QJHT]
218583
218654
+
Cys
GCA
[ENA]
¡û
>W2011258535
QJHU01000003
Actinomycetota
Cutibacterium acnes T28840 [QJHU]
526576
526505
-
Cys
GCA
[ENA]
¡û
>W2011258698
QJHY01000001
Actinomycetota
Cutibacterium acnes T19558 [QJHY]
526780
526709
-
Cys
GCA
[ENA]
¡û
>W2011258803
QJIA01000007
Actinomycetota
Cutibacterium avidum T19584 [QJIA]
202440
202369
-
Cys
GCA
[ENA]
¡û
>W2011258824
QJIB01000001
Actinomycetota
Cutibacterium acnes T19650 [QJIB]
218646
218717
+
Cys
GCA
[ENA]
¡û
>W2011258867
QJIC01000001
Actinomycetota
Cutibacterium acnes T19558 [QJIC]
218621
218692
+
Cys
GCA
[ENA]
¡û
>W2011258973
QJIE01000002
Actinomycetota
Cutibacterium acnes T45864 [QJIE]
328855
328926
+
Cys
GCA
[ENA]
¡û
>W2011259229
QJIK01000001
Actinomycetota
Cutibacterium acnes T16975 [QJIK]
353444
353515
+
Cys
GCA
[ENA]
¡û
>W2011259348
QJIM01000004
Actinomycetota
Cutibacterium acnes M13530 [QJIM]
353420
353491
+
Cys
GCA
[ENA]
¡û
>W2011259469
QJIP01000002
Actinomycetota
Cutibacterium acnes T36318 [QJIP]
239491
239562
+
Cys
GCA
[ENA]
¡û
>W2011259683
QJIU01000001
Actinomycetota
Cutibacterium acnes T45321 [QJIU]
378855
378926
+
Cys
GCA
[ENA]
¡û
>W2011259833
QJIX01000002
Actinomycetota
Cutibacterium acnes T77864 [QJIX]
353000
353071
+
Cys
GCA
[ENA]
¡û
>W2011413419
REFW01000002
Actinomycetota
Tessaracoccus sp. JDX10 [REFW]
677814
677885
+
Cys
GCA
[ENA]
¡û
>W2011484247
RQYZ01000001
Actinomycetota
Tessaracoccus sp. OH4464_COT-324 [RQYZ]
401684
401613
-
Cys
GCA
[ENA]
¡û
>W2011654105
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
967017
966946
-
Cys
GCA
[ENA]
¡û
>W2011950955
UWOQ01000002
Actinomycetota
[Propionibacterium] humerusii Marseille-P5998 [UWOQ]
359839
359910
+
Cys
GCA
[ENA]
¡û
>W2011968866
VBXR01000001
Actinomycetota
Cutibacterium acnes W65-307 [VBXR]
232174
232103
-
Cys
GCA
[ENA]
¡û
>W2011969042
VBXV01000001
Actinomycetota
Cutibacterium acnes T45-496 [VBXV]
526539
526468
-
Cys
GCA
[ENA]
¡û
>W2011969320
VBYB01000004
Actinomycetota
Cutibacterium acnes T28794 [VBYB]
718
789
+
Cys
GCA
[ENA]
¡û
>W2011969325
VBYB01000004
Actinomycetota
Cutibacterium acnes T28794 [VBYB]
138
67
-
Cys
GCA
[ENA]
¡û
>W2011969393
VBYD01000001
Actinomycetota
Cutibacterium acnes P16-206 [VBYD]
218603
218674
+
Cys
GCA
[ENA]
¡û
>W2011969544
VBYG01000002
Actinomycetota
Cutibacterium acnes P15-208 [VBYG]
328842
328913
+
Cys
GCA
[ENA]
¡û
>W2011969688
VBYJ01000002
Actinomycetota
Cutibacterium acnes P15-186 [VBYJ]
353066
353137
+
Cys
GCA
[ENA]
¡û
>W2011969965
VBYP01000004
Actinomycetota
Cutibacterium acnes P15-159 [VBYP]
353413
353484
+
Cys
GCA
[ENA]
¡û
>W2011969996
VBYQ01000002
Actinomycetota
Cutibacterium acnes P15-113 [VBYQ]
244194
244265
+
Cys
GCA
[ENA]
¡û
>W2011970404
VBYZ01000002
Actinomycetota
Cutibacterium acnes P15-014 [VBYZ]
353000
353071
+
Cys
GCA
[ENA]
¡û
>W2011970435
VBZA01000001
Actinomycetota
Cutibacterium acnes P14-108 [VBZA]
375280
375351
+
Cys
GCA
[ENA]
¡û
>W2011973213
VCHU01000048
Actinomycetota
Cutibacterium acnes T45387 [VCHU]
2930
3001
+
Cys
GCA
[ENA]
¡û
>W2011982143
VDFQ02000002
Actinomycetota
Mumia sp. Z350 [VDFQ]
120751
120822
+
Cys
GCA
[ENA]
¡û
>W2011982231
VDFR01000129
Actinomycetota
Mumia sp. Z527 [VDFR]
53504
53575
+
Cys
GCA
[ENA]
¡û
>W2011982248
VDFR01000230
Actinomycetota
Mumia sp. Z527 [VDFR]
19670
19599
-
Cys
GCA
[ENA]
¡û
>W2012030032
VHIB01000011
Actinomycetota
Marmoricola sp. YIM 730233 [VHIB]
218178
218249
+
Cys
GCA
[ENA]
¡û
>W2012071258
VKKG01000001
Actinomycetota
Tessaracoccus rhinocerotis YIM 101269 [VKKG]
2107
2036
-
Cys
GCA
[ENA]
¡û
>W2012154334
VUMG01000002
Actinomycetota
Cutibacterium sp. WCA-380-WT-3A [VUMG]
394544
394615
+
Cys
GCA
[ENA]
¡û
>W2012356819
WJYO01000002
Actinomycetota
Mumia xiangluensis NEAU-KD1 T [WJYO]
120751
120822
+
Cys
GCA
[ENA]
¡û
>ENV09003586
ADGO01095698
Compost metagenome contig00001
250
321
+
Cys
GCA
[ENA]
¡û
>W2110201551
JACDTV010000008
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
171936
171865
-
Cys
GCA
[ENA]
¡û
>W2110303560
JADCLL010000005
Actinomycetota
Nocardioides kribbensis DSM 16314 [JADCLL]
85503
85574
+
Cys
GCA
[ENA]
¡û
>W2110303602
JADCLM010000008
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
171936
171865
-
Cys
GCA
[ENA]
¡û
>W2110326531
JADIVZ010000004
Actinomycetota
Nocardioides acrostichi CBS4Y-1 [JADIVZ]
246245
246174
-
Cys
GCA
[ENA]
¡û
>W2110458379
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
351679
351750
+
Cys
GCA
[ENA]
¡û
>W2110656851
JAHWCI010000006
Actinomycetota
Mumia sp. zg.B17 [JAHWCI]
113014
113085
+
Cys
GCA
[ENA]
¡û
>W2110656926
JAHWCJ010000004
Actinomycetota
Mumia sp. zg.B21 [JAHWCJ]
669884
669813
-
Cys
GCA
[ENA]
¡û
>W2110656973
JAHWCK010000006
Actinomycetota
Mumia sp. zg.B53 [JAHWCK]
249079
249008
-
Cys
GCA
[ENA]
¡û
>W10120848
ADXR01000069
Actinomycetota
Cutibacterium acnes HL072PA2 [ADXR]
29502
29573
+
Cys
GCA
[ENA]
¡û
>C241176400
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
3431955
3431884
-
Cys
GCA
-
¡û
>W2310010968
BNET01000007
Actinomycetota
Nocardioides sp. OK12 [BNET]
125242
125313
+
Cys
GCA
[ENA]
¡û
>W11127592
ADXR01000069
Actinomycetota
Cutibacterium acnes HL072PA2 [ADXR]
29502
29573
+
Cys
GCA
[ENA]
¡û
>W1710083197
BDJE01000017
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
104658
104585
-
Cys
GCA
[ENA]
¡û
>W1710512555
FMZM01000012
Actinomycetota
Nocardioides lianchengensis [FMZM]
60819
60890
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK