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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458344 (24 seq.)
>W1711138237
LVCP01000016
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
14937
14862
-
Glu
TTC
[ENA]
¡û
>W1711229030
LXYB01000009
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
14569
14494
-
Glu
TTC
[ENA]
¡û
>W1711274131
LZGF01000014
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
14938
14863
-
Glu
TTC
[ENA]
¡û
>W1711437751
MIPS01000014
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
67487
67412
-
Glu
TTC
[ENA]
¡û
>W1711437760
MIPS01000021
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
235
160
-
Glu
TTC
[ENA]
¡û
>C08000464
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
1196963
1196891
-
Glu
TTC
[Ensembl]
¡û
>WENV170635770
JDSH01001613
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
507
432
-
Glu
TTC
[ENA]
¢þ
>WENV170635826
JDSH01015186
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
247
172
-
Glu
TTC
[ENA]
¢þ
>WENV170646480
JQGR01012362
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
171
246
+
Glu
TTC
[ENA]
¢þ
>WENV170646485
JQGR01013923
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
4
79
+
Glu
TTC
[ENA]
¢þ
>WENV170704438
LLEK01000371
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
407
482
+
Glu
TTC
[ENA]
¢þ
>WENV170704491
LLEK01001377
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1331
1406
+
Glu
TTC
[ENA]
¢þ
>C181029183
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
73518
73593
+
Glu
TTC
-
¡û
>C181029212
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
1541513
1541438
-
Glu
TTC
-
¡û
>C181029219
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
75051
75126
+
Glu
TTC
-
¡û
>C181029239
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
1621449
1621374
-
Glu
TTC
-
¡û
>C181213442
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
1197450
1197375
-
Glu
TTC
-
¡û
>W141560299
JHXL01000015
Mycoplasmatota
Acholeplasma equifetale ATCC 29724 [JHXL]
2604
2679
+
Glu
TTC
[ENA]
¡û
>W141560982
JHYB01000002
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
3003
3078
+
Glu
TTC
[ENA]
¡û
>W141560991
JHYB01000002
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
432373
432298
-
Glu
TTC
[ENA]
¡û
>W1910884391
NELN02000004
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
3347
3422
+
Glu
TTC
[ENA]
¡û
>W1910884423
NELO02000004
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
3347
3422
+
Glu
TTC
[ENA]
¡û
>W1810787475
QRDS01000001
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
1119062
1118987
-
Glu
TTC
[ENA]
¡û
>W1610949323
LVCP01000016
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
14937
14862
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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