This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461415 (51 seq.)
>W1711097997
LTJE01000045
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
1442
1515
+
Trp
CCA
[ENA]
¡û
>WENV180100598
OAOS01000025
[OAOS] marine metagenome; ENVO.00002110
2592
2521
-
Trp
CCA
[ENA]
¡û
>WENV180101927
OAOX01000208
[OAOX] marine metagenome; l
55
126
+
Trp
CCA
[ENA]
¡û
>WENV180104327
OAPC01001587
[OAPC] marine metagenome; na
1398
1469
+
Trp
CCA
[ENA]
¡û
>WENV180106709
OAPF01000676
[OAPF] marine metagenome; ENVO:00002010
414
343
-
Trp
CCA
[ENA]
¡û
>WENV180110169
OAPM01000742
[OAPM] marine metagenome; ENVO.00002110
2587
2516
-
Trp
CCA
[ENA]
¡û
>WENV180208523
OBAJ01000372
[OBAJ] marine metagenome; Coastal water
1864
1935
+
Trp
CCA
[ENA]
¡û
>WENV180357771
OBNO01000143
[OBNO] marine metagenome; ENVO 00002150
937
1008
+
Trp
CCA
[ENA]
¡û
>WENV180358644
OBNQ01001220
[OBNQ] marine metagenome; ENVO 00002150
973
902
-
Trp
CCA
[ENA]
¡û
>WENV180361807
OBNW01002133
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
898
827
-
Trp
CCA
[ENA]
¡û
>WENV180370288
OBOH01062862
[OBOH] marine metagenome; ENVO:00002010
134
205
+
Trp
CCA
[ENA]
¡û
>WENV180379310
OBOP01015885
[OBOP] marine metagenome; water
120
49
-
Trp
CCA
[ENA]
¡û
>WENV180380577
OBOR01000241
[OBOR] marine metagenome; ENVO 00002227
2380
2309
-
Trp
CCA
[ENA]
¡û
>WENV180384520
OBOY01000800
[OBOY] marine metagenome; Sterile flask
1790
1861
+
Trp
CCA
[ENA]
¡û
>WENV180388872
OBPI01001314
[OBPI] marine metagenome; Sterile flask
400
329
-
Trp
CCA
[ENA]
¡û
>WENV180389339
OBPJ01003786
[OBPJ] marine metagenome; seawater
630
559
-
Trp
CCA
[ENA]
¡û
>WENV180390332
OBPK01099560
[OBPK] marine metagenome; Sterile flask
103
174
+
Trp
CCA
[ENA]
¡û
>WENV180390844
OBPL01047072
[OBPL] marine metagenome; Sterivex filter
228
157
-
Trp
CCA
[ENA]
¡û
>WENV180397005
OBPX01000536
[OBPX] marine metagenome; vv
1278
1349
+
Trp
CCA
[ENA]
¡û
>WENV180398286
OBQA01006036
[OBQA] marine metagenome; PVDF and polycarbonate filters
406
335
-
Trp
CCA
[ENA]
¡û
>WENV180587366
OCOO01001003
[OCOO] marine metagenome; seawater
1187
1258
+
Trp
CCA
[ENA]
¡û
>WENV180589676
OCOS01005776
[OCOS] marine metagenome; Sterile flask
648
719
+
Trp
CCA
[ENA]
¡û
>WENV180594233
OCOZ01001436
[OCOZ] marine metagenome; vv
1288
1359
+
Trp
CCA
[ENA]
¡û
>WENV180637248
OCRG01004257
[OCRG] marine metagenome; seawater
868
939
+
Trp
CCA
[ENA]
¡û
>WENV180637994
OCRH01000415
[OCRH] marine metagenome; ENVO_00002010
206
277
+
Trp
CCA
[ENA]
¡û
>WENV181195925
OEQV01002100
[OEQV] metagenome; water of meat washing
587
516
-
Trp
CCA
[ENA]
¡û
>WENV181199514
OERH01003877
[OERH] metagenome; water of meat washing
720
649
-
Trp
CCA
[ENA]
¡û
>W141266232
CCMH01000003
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
146178
146105
-
Trp
CCA
[ENA]
¡û
>WENV170010536
APMI01019705
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1784
1857
+
Trp
CCA
[ENA]
¡û
>WENV170275089
CERM01064350
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
343
270
-
Trp
CCA
[ENA]
¡û
>WENV170344033
CETE01059886
[CETE] marine metagenome genome assembly TARA_109_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2517
2444
-
Trp
CCA
[ENA]
¡û
>WENV170471645
CEVG01091473
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
295
368
+
Trp
CCA
[ENA]
¡û
>WENV170523338
CEWG01196195
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
268
339
+
Trp
CCA
[ENA]
¡û
>WENV170603778
FUWD010334119
[FUWD] metagenome; unknown
302
375
+
Trp
CCA
[ENA]
¡û
>WENV170926890
MDTG01107626
[MDTG] marine metagenome; seawater
1469
1540
+
Trp
CCA
[ENA]
¡û
>WENV170944350
MDTG01413205
[MDTG] marine metagenome; seawater
1769
1696
-
Trp
CCA
[ENA]
¡û
>W1910584226
JXSZ01000016
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
29352
29423
+
Trp
CCA
[ENA]
¡û
>W2010102722
BJXC01000035
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [BJXC]
37683
37612
-
Trp
CCA
[ENA]
¡û
>W2010750649
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
329701
329772
+
Trp
CCA
[ENA]
¡û
>W2011410148
RDOJ01000001
Bacteroidota
Flavobacteriaceae bacterium YIM 102668 [RDOJ]
109198
109269
+
Trp
CCA
[ENA]
¡û
>W2110140943
JAAGKM010000002
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
34884
34813
-
Trp
CCA
[ENA]
¡û
>W2110285711
JACXZC010000002
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
19437
19508
+
Trp
CCA
[ENA]
¡û
>C201136127
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
529957
529886
-
Trp
CCA
-
¡û
>C211314266
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
1413024
1413095
+
Trp
CCA
-
¡û
>C231183437
CP083757
Bacteroidota
Marinilongibacter aquaticus YYF0007 [CP083757]
2297939
2297868
-
Trp
CCA
-
¡û
>C241359050
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
1377339
1377410
+
Trp
CCA
-
¡û
>C11123831
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
751404
751331
-
Trp
CCA
[Ensembl]
¡û
>W1610503156
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
665539
665612
+
Trp
CCA
[ENA]
¡û
>W1710496390
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
665539
665612
+
Trp
CCA
[ENA]
¡û
>W1710570212
FOUZ01000005
Bacteroidota
Algoriella xinjiangensis [FOUZ]
68255
68328
+
Trp
CCA
[ENA]
¡û
>W1710590760
FRBH01000001
Bacteroidota
Chishuiella changwenlii [FRBH]
49504
49431
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK