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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463196 (42 seq.)
>W1711228865
LXWX01000111
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
537
462
-
Met
CAT
[ENA]
¡û
>W131163827
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1092003
1092078
+
Met
CAT
[ENA]
¡û
>W131166838
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
316732
316657
-
Met
CAT
[ENA]
¡û
>W131186339
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
145125
145050
-
Met
CAT
[ENA]
¡û
>WENV180270855
OBEQ012209120
[OBEQ] groundwater metagenome; groundwater
708
633
-
Ile2
CAT
[ENA]
¢þ
>W141188917
AYNA01000128
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
20542
20467
-
Met
CAT
[ENA]
¡û
>W08008843
ABLP01000003
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
346531
346606
+
Met
CAT
[ENA]
¡û
>C08001594
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
3968812
3968740
-
Met
CAT
[Ensembl]
¡û
>WENV183669967
ORJL010893897
[ORJL] groundwater metagenome; groundwater
660
735
+
Ile2
CAT
[ENA]
¢þ
>WENV183671319
ORJL011046479
[ORJL] groundwater metagenome; groundwater
4309
4234
-
Ile2
CAT
[ENA]
¢þ
>WENV170011132
APMI01045315
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
259
334
+
Met
CAT
[ENA]
¢þ
>WENV170012383
APMI01166221
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
697
622
-
Met
CAT
[ENA]
¢þ
>WENV170552943
CXWK01004355
[CXWK] wastewater metagenome; activated sludge
12768
12693
-
Met
CAT
[ENA]
¢þ
>WENV170714659
LNFM01092097
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1491
1416
-
Met
CAT
[ENA]
¢þ
>WENV170975077
MTKY01090362
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3583
3508
-
Met
CAT
[ENA]
¢þ
>C181089655
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1236913
1236838
-
Met
CAT
-
¡û
>C191028856
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
1169451
1169526
+
Met
CAT
-
¡û
>C191029908
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
822967
823042
+
Met
CAT
-
¡û
>C191118918
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
1152924
1152849
-
Met
CAT
-
¡û
>C191220363
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
395952
395877
-
Met
CAT
-
¡û
>C191221067
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
2826156
2826231
+
Met
CAT
-
¡û
>W141817260
JQKO01000001
Alphaproteobacteria
Methylocapsa aurea [JQKO]
140858
140933
+
Met
CAT
[ENA]
¡û
>W141821209
JQNK01000008
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
509947
509872
-
Met
CAT
[ENA]
¡û
>W1910914017
NHSJ01000118
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
25420
25495
+
Met
CAT
[ENA]
¡û
>W1911148304
NPET01000003
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
94199
94274
+
Met
CAT
[ENA]
¡û
>C09107930
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
358737
358662
-
Met
CAT
[Ensembl]
¡û
>W1911219107
NRRJ01000012
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
87696
87771
+
Met
CAT
[ENA]
¡û
>W1911747233
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
2674136
2674211
+
Met
CAT
[ENA]
¡û
>W1810068784
PDZR01000004
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
125813
125888
+
Met
CAT
[ENA]
¡û
>W1810330569
PUIV01000018
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
51547
51472
-
Met
CAT
[ENA]
¡û
>W1810397217
PYDU01000020
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
37835
37760
-
Met
CAT
[ENA]
¡û
>W1810720678
QNRK01000028
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
91029
90954
-
Met
CAT
[ENA]
¡û
>W1810884377
QUMO01000004
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
61907
61832
-
Met
CAT
[ENA]
¡û
>SRA1013914
SRR023820.17181
Pru Toh Daeng peat swamp (SRP001114)
77
152
+
Met
CAT
[SRA]
>SRA1013937
SRR023820.62040
Pru Toh Daeng peat swamp (SRP001114)
80
155
+
Met
CAT
[SRA]
>W10118845
ADVE01000069
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
22106
22181
+
Met
CAT
[ENA]
¡û
>W11125017
ADVE01000069
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
22106
22181
+
Met
CAT
[ENA]
¡û
>W11150233
AEVM01000007
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
140585
140660
+
Met
CAT
[ENA]
¡û
>C131019926
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
3725302
3725227
-
Met
CAT
[Ensembl]
¡û
>W1611012782
LXWX01000111
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
537
462
-
Met
CAT
[ENA]
¡û
>W1710567153
FOSN01000001
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
306184
306259
+
Met
CAT
[ENA]
¡û
>W1710609856
FYDG01000003
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
17033
16958
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK