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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46511 (64 seq.)
>WENV180240938
OBDE01067250
[OBDE] human gut metagenome; human gut
25
113
+
Leu
TAA
[ENA]
¡û
>WENV180542146
OCHS01062396
[OCHS] human gut metagenome; human gut
216
304
+
Leu
TAA
[ENA]
¡û
>WENV180549591
OCIY01187137
[OCIY] human gut metagenome; human gut
158
70
-
Leu
TAA
[ENA]
¡û
>WENV180567204
OCLL01012361
[OCLL] human gut metagenome; human gut
987
1075
+
Leu
TAA
[ENA]
¡û
>WENV180572864
OCLU01163128
[OCLU] human gut metagenome; human gut
125
213
+
Leu
TAA
[ENA]
¡û
>WENV180628394
OCQO01120170
[OCQO] human gut metagenome; human gut
217
129
-
Leu
TAA
[ENA]
¡û
>WENV180630655
OCQT01113929
[OCQT] human gut metagenome; human gut
202
114
-
Leu
TAA
[ENA]
¡û
>WENV180716038
ODFW01163357
[ODFW] human metagenome; G_DNA_Stool
132
220
+
Leu
TAA
[ENA]
¡û
>WENV180746418
ODHN01000014
[ODHN] human metagenome; G_DNA_Stool
129162
129074
-
Leu
TAA
[ENA]
¡û
>WENV180871316
ODLN01040692
[ODLN] human metagenome; G_DNA_Stool
566
654
+
Leu
TAA
[ENA]
¡û
>WENV181056523
ODYJ01007904
[ODYJ] human metagenome; G_DNA_Stool
271
183
-
Leu
TAA
[ENA]
¡û
>WENV181350458
OFMO01017327
[OFMO] human gut metagenome; human gut
1023
1111
+
Leu
TAA
[ENA]
¡û
>WENV181437500
OGDF01132694
[OGDF] human gut metagenome; human gut
273
185
-
Leu
TAA
[ENA]
¡û
>WENV181441528
OGDN01009127
[OGDN] human gut metagenome; human gut
2202
2290
+
Leu
TAA
[ENA]
¡û
>WENV181450141
OGDY01000121
[OGDY] metagenome; Human gut stool
22305
22217
-
Leu
TAA
[ENA]
¡û
>WENV181525992
OGHJ01001797
[OGHJ] metagenome; Human gut stool
20472
20560
+
Leu
TAA
[ENA]
¡û
>WENV181659527
OGOE01022523
[OGOE] human gut metagenome; faeces
362
274
-
Leu
TAA
[ENA]
¡û
>WENV182622216
OJKJ01011237
[OJKJ] metagenome; faeces
1487
1575
+
Leu
TAA
[ENA]
¡û
>WENV182753310
OJRC01004423
[OJRC] human gut metagenome; stool sample
2157
2069
-
Leu
TAA
[ENA]
¡û
>WENV182764568
OJRP01041315
[OJRP] human gut metagenome; stool sample
274
186
-
Leu
TAA
[ENA]
¡û
>WENV182946378
OKVK01023677
[OKVK] human gut metagenome; human gut
981
1069
+
Leu
TAA
[ENA]
¡û
>WENV183099798
OLNF01018919
[OLNF] human gut metagenome; faeces
211
123
-
Leu
TAA
[ENA]
¡û
>WENV183124795
OLNW01046892
[OLNW] human gut metagenome; faeces
736
824
+
Leu
TAA
[ENA]
¡û
>WENV183128144
OLNZ01002585
[OLNZ] human gut metagenome; faeces
7700
7612
-
Leu
TAA
[ENA]
¡û
>WENV183167524
OLOZ01000305
[OLOZ] human gut metagenome; faeces
10161
10249
+
Leu
TAA
[ENA]
¡û
>WENV183221751
OLQL01023371
[OLQL] human gut metagenome; faeces
1258
1346
+
Leu
TAA
[ENA]
¡û
>WENV183241053
OLRA01039276
[OLRA] human gut metagenome; faeces
593
681
+
Leu
TAA
[ENA]
¡û
>WENV183243669
OLRD01000525
[OLRD] human gut metagenome; faeces
30320
30406
+
Leu
TAA
[ENA]
¡û
>WENV183306352
OLSX01023387
[OLSX] human gut metagenome; faeces
164
76
-
Leu
TAA
[ENA]
¡û
>WENV183372309
OLXW01004931
[OLXW] human gut metagenome; feces
3486
3574
+
Leu
TAA
[ENA]
¡û
>WENV183634479
OOIG01033641
[OOIG] human gut metagenome; human gut
1300
1388
+
Leu
TAA
[ENA]
¡û
>WENV183639888
OQVL01000160
[OQVL] human gut metagenome; human gut
214
126
-
Leu
TAA
[ENA]
¡û
>WENV183654665
OQWD01000188
[OQWD] human gut metagenome; human gut
24125
24213
+
Leu
TAA
[ENA]
¡û
>WENV183773980
PPYF01028815
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5198
5110
-
Leu
TAA
[ENA]
¡û
>WENV170069137
CDZP01032830
[CDZP] gut metagenome; human stools
247
159
-
Leu
TAA
[ENA]
¡û
>WENV170071001
CDZQ01043265
[CDZQ] gut metagenome; human stools
1726
1638
-
Leu
TAA
[ENA]
¡û
>WENV170675204
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
179
267
+
Leu
TAA
[ENA]
¡û
>WENV170675433
LCWZ01071815
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
179
267
+
Leu
TAA
[ENA]
¡û
>WENV170687041
LFRM01174526
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1852
1764
-
Leu
TAA
[ENA]
¡û
>WENV170718357
LSQX01072434
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
92
180
+
Leu
TAA
[ENA]
¡û
>WENV170726623
LSQX01387769
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1379
1291
-
Leu
TAA
[ENA]
¡û
>WENV170970405
MTKW01067944
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1911
1999
+
Leu
TAA
[ENA]
¡û
>C191138164
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1879731
1879643
-
Leu
TAA
-
¡û
>W1810250643
PQDH01000001
Bacillota
Vallitalea okinawensis S15 [PQDH]
1117827
1117742
-
Leu
TAA
[ENA]
¡û
>W1810250665
PQDH01000006
Bacillota
Vallitalea okinawensis S15 [PQDH]
345043
344955
-
Leu
TAA
[ENA]
¡û
>W1810250714
PQDH01000029
Bacillota
Vallitalea okinawensis S15 [PQDH]
22700
22613
-
Leu
TAA
[ENA]
¡û
>W1810250721
PQDH01000034
Bacillota
Vallitalea okinawensis S15 [PQDH]
762
850
+
Leu
TAA
[ENA]
¡û
>W2011317001
QWEJ01000011
Bacillota
Emergencia sp. 1XD21-50 [QWEJ]
52252
52340
+
Leu
TAA
[ENA]
¡û
>W2012154787
VUMO01000016
Bacillota
Eubacteriaceae bacterium RF-744-FAT-4 [VUMO]
24241
24329
+
Leu
TAA
[ENA]
¡û
>W2110248024
JACRTA010000002
Bacillota
Mogibacterium sp. NSJ-24 [JACRTA]
378486
378574
+
Leu
TAA
[ENA]
¡û
>W2110249943
JACRWC010000096
Bacillota
Clostridiales Family XIII bacterium BX16 [JACRWC]
378
290
-
Leu
TAA
[ENA]
¡û
>W2110588539
JAHBCL010000007
Bacillota
Fusibacter paucivorans DSM 12116 [JAHBCL]
128
216
+
Leu
TAA
[ENA]
¡û
>C211395047
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
147928
148016
+
Leu
TAA
-
¡û
>C211395089
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1192758
1192846
+
Leu
TAA
-
¡û
>C211395105
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1194682
1194770
+
Leu
TAA
-
¡û
>C211395121
CP082326
Bacillota
Crassaminicella profunda Ra1766H [CP082326]
1203904
1203992
+
Leu
TAA
-
¡û
>C231016065
AP025567
Bacillota
Emergencia timonensis CE91-St48 [AP025567]
2823410
2823322
-
Leu
TAA
-
¡û
>C231016116
AP025568
Bacillota
Emergencia timonensis CE91-St49 [AP025568]
2823401
2823313
-
Leu
TAA
-
¡û
>W2310019048
BRLB01000012
Bacillota
Vallitalea longa SH18-1 [BRLB]
625
712
+
Leu
TAA
[ENA]
¡û
>W2310019057
BRLB01000026
Bacillota
Vallitalea longa SH18-1 [BRLB]
794
881
+
Leu
TAA
[ENA]
¡û
>W1610501816
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
928763
928851
+
Leu
TAA
[ENA]
¡û
>W1710082566
BDHH01000006
Bacillota
Fusibacter sp. 3D3 [BDHH]
1532
1620
+
Leu
TAA
[ENA]
¡û
>W1710082598
BDHH01000020
Bacillota
Fusibacter sp. 3D3 [BDHH]
1418
1506
+
Leu
TAA
[ENA]
¡û
>W1710495286
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
928763
928851
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK