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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47180 (23 seq.)
>C007397
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
2255590
2255503
-
Ser
GGA
[Ensembl]
¡û
>C007431
CP000240
Cyanobacteriota
Synechococcus sp. JA-2-3B'a[2-13] [CP000240]
2510766
2510850
+
Ser
GGA
[Ensembl]
¡û
>C025507
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
153813
153897
+
Ser
GGA
[Ensembl]
¡û
>WENV180013462
FMSI01086933
[FMSI] soil metagenome; Soil
86
-1
-
Ser
GGA
[ENA]
¢þ
>WENV181412230
OGCI01101528
[OGCI] hot springs metagenome; Hot spring water
432
516
+
Ser
GGA
[ENA]
¢þ
>WENV181414139
OGCL01000045
[OGCL] hot springs metagenome; Hot spring water
36318
36402
+
Ser
GGA
[ENA]
¢þ
>WENV170000507
AFSR01000022
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
7620
7534
-
Ser
GGA
[ENA]
¢þ
>WENV170000522
AFSR01000052
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
36177
36265
+
Ser
GGA
[ENA]
¢þ
>WENV170000826
AFSR01005854
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1039
951
-
Ser
GGA
[ENA]
¢þ
>C181030493
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
628438
628354
-
Ser
GGA
-
¡û
>C191001200
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
461935
462022
+
Ser
GGA
-
¡û
>C191085240
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
327508
327420
-
Ser
GGA
-
¡û
>W1910002830
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
2480171
2480258
+
Ser
GGA
[ENA]
¡û
>W1910002868
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
1888688
1888775
+
Ser
GGA
[ENA]
¡û
>W1910005398
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
1419718
1419631
-
Ser
GGA
[ENA]
¡û
>W1910005414
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
103978
104065
+
Ser
GGA
[ENA]
¡û
>W1910005475
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
2315417
2315504
+
Ser
GGA
[ENA]
¡û
>W1910005514
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
1655296
1655383
+
Ser
GGA
[ENA]
¡û
>C141007957
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
240003
239915
-
Ser
GGA
-
¡û
>WENV11100850
AFSR01000022
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
7620
7534
-
Ser
GGA
[ENA]
¡û
>WENV11100865
AFSR01000052
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
36177
36265
+
Ser
GGA
[ENA]
¡û
>WENV11101169
AFSR01005854
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1039
951
-
Ser
GGA
[ENA]
¡û
>C131004317
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
3335015
3335101
+
Ser
GGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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