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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474654 (71 seq.)
>W1710873504
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
887643
887716
+
Cys
GCA
[ENA]
¡û
>W1711259841
LYVO01000102
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
8333
8260
-
Cys
GCA
[ENA]
¡û
>W1711386480
MEFM01000011
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
133505
133578
+
Cys
GCA
[ENA]
¡û
>W1711387459
MEGR01000003
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
123932
124005
+
Cys
GCA
[ENA]
¡û
>C171063216
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
2925463
2925390
-
Cys
GCA
-
¡û
>WENV180285895
OBID01800728
[OBID] metagenome; sludge
135
62
-
Cys
GCA
[ENA]
¡û
>WENV180731599
ODGW01003110
[ODGW] human metagenome; G_DNA_Supragingival plaque
110
183
+
Cys
GCA
[ENA]
¡û
>WENV180938673
ODTX01004900
[ODTX] human metagenome; G_DNA_Supragingival plaque
110
183
+
Cys
GCA
[ENA]
¡û
>WENV180981758
ODVE01055591
[ODVE] human metagenome; G_DNA_Supragingival plaque
533
460
-
Cys
GCA
[ENA]
¡û
>WENV183735645
PJUB01000310
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23584
23511
-
Cys
GCA
[ENA]
¡û
>WENV183736355
PJUC01001028
[PJUC] soil metagenome; Soil enriched on filter paper
5321
5394
+
Cys
GCA
[ENA]
¡û
>WENV183741913
PJUH01000006
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
428132
428205
+
Cys
GCA
[ENA]
¡û
>WENV183742938
PJUI01015722
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
171
244
+
Cys
GCA
[ENA]
¡û
>WENV183744349
PJUK01009770
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
795
722
-
Cys
GCA
[ENA]
¡û
>WENV170020309
BBPE01005589
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
9250
9323
+
Cys
GCA
[ENA]
¡û
>WENV170649499
JRYC01012419
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
255
182
-
Cys
GCA
[ENA]
¡û
>WENV171003328
NNBT01004890
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1011
938
-
Cys
GCA
[ENA]
¡û
>W141558095
JHVQ01000012
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
192774
192847
+
Cys
GCA
[ENA]
¡û
>W09119931
ACEE01000019
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
19434
19361
-
Cys
GCA
[ENA]
¡û
>C09111098
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2653845
2653918
+
Cys
GCA
[Ensembl]
¡û
>C141002571
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
3206732
3206659
-
Cys
GCA
[Ensembl]
¡û
>W1810486656
QAYA01000002
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
584757
584830
+
Cys
GCA
[ENA]
¡û
>W1810672531
QJTM01000003
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
584757
584830
+
Cys
GCA
[ENA]
¡û
>SRA1015363
SRR023846.30547
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
95
-
Cys
GCA
[SRA]
>W2010108353
BKDH01000001
Betaproteobacteria
Variovorax boronicumulans HAB-30 [BKDH]
2576930
2576857
-
Cys
GCA
[ENA]
¡û
>W2010308744
CABWKX010000018
Betaproteobacteria
Burkholderiales bacterium 8X [CABWKX]
316844
316771
-
Cys
GCA
[ENA]
¡û
>W2010469840
JAAGOW010000003
Betaproteobacteria
Variovorax sp. WS11 [JAAGOW]
177809
177882
+
Cys
GCA
[ENA]
¡û
>W2010609297
JABMJH010000002
Betaproteobacteria
Variovorax sp. SG533 [JABMJH]
240807
240734
-
Cys
GCA
[ENA]
¡û
>W2010802570
LZZW01000037
Betaproteobacteria
Variovorax sp. UMC13 [LZZW]
62013
61940
-
Cys
GCA
[ENA]
¡û
>W2010901283
MRCN01000004
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
296557
296484
-
Cys
GCA
[ENA]
¡û
>W2011157595
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
3427551
3427624
+
Cys
GCA
[ENA]
¡û
>W2011494469
RWKH01000026
Betaproteobacteria
Variovorax sp. DXTD-1 [RWKH]
75727
75800
+
Cys
GCA
[ENA]
¡û
>W2011494482
RWKI01000001
Betaproteobacteria
Variovorax sp. MHTC-1 [RWKI]
583790
583717
-
Cys
GCA
[ENA]
¡û
>W2011495724
RXFQ01000003
Betaproteobacteria
Variovorax sp. 502 [RXFQ]
407547
407620
+
Cys
GCA
[ENA]
¡û
>W2011522466
SACT01000001
Betaproteobacteria
Rubrivivax sp. ICH-3 [SACT]
988731
988804
+
Cys
GCA
[ENA]
¡û
>W2011539107
SCNM01000018
Betaproteobacteria
Variovorax sp. 3P27G3 [SCNM]
22053
21980
-
Cys
GCA
[ENA]
¡û
>W2011577706
SGWS01000003
Betaproteobacteria
Variovorax sp. BK460 [SGWS]
140261
140188
-
Cys
GCA
[ENA]
¡û
>W2011624478
SLYJ01000004
Betaproteobacteria
Variovorax sp. GV051 [SLYJ]
584757
584830
+
Cys
GCA
[ENA]
¡û
>W2011971317
VCCD02000001
Betaproteobacteria
Variovorax sp. KBS0712 [VCCD]
1793109
1793036
-
Cys
GCA
[ENA]
¡û
>W2011997657
VEDO01000002
Betaproteobacteria
Variovorax boronicumulans DE0202 [VEDO]
350511
350438
-
Cys
GCA
[ENA]
¡û
>W2110049150
BMYK01000014
Betaproteobacteria
Pseudorhodoferax aquiterrae KCTC 23314 [BMYK]
125085
125158
+
Cys
GCA
[ENA]
¡û
>W2110079478
CAIGKF010000031
Betaproteobacteria
Variovorax paradoxus [CAIGKF]
13449
13376
-
Cys
GCA
[ENA]
¡û
>W2110120514
CAJQUA010000001
Betaproteobacteria
Brachymonas denitrificans [CAJQUA]
976342
976269
-
Cys
GCA
[ENA]
¡û
>W2110134455
JAAAFX010000009
Betaproteobacteria
Variovorax boronicumulans Xaverov 112 [JAAAFX]
1348901
1348828
-
Cys
GCA
[ENA]
¡û
>W2110260503
JACSQK010000006
Betaproteobacteria
Comamonas sp. Sa2CVA6 [JACSQK]
114524
114597
+
Cys
GCA
[ENA]
¡û
>W2110266982
JACUZW010000002
Betaproteobacteria
Comamonas sp. CMM02 [JACUZW]
826064
826137
+
Cys
GCA
[ENA]
¡û
>W2110268665
JACVBS010000004
Betaproteobacteria
Variovorax sp. VRV01 [JACVBS]
13517
13444
-
Cys
GCA
[ENA]
¡û
>W2110408638
JAEFCB010000011
Betaproteobacteria
Variovorax sp. IB41 [JAEFCB]
118700
118773
+
Cys
GCA
[ENA]
¡û
>W2110541748
JAGGNV010000066
Betaproteobacteria
Variovorax paradoxus ISL-79 [JAGGNV]
55131
55204
+
Cys
GCA
[ENA]
¡û
>C201306955
LR594659
Betaproteobacteria
Variovorax sp. PBL-H6 [LR594659]
3204772
3204699
-
Cys
GCA
-
¡û
>C201307133
LR594675
Betaproteobacteria
Variovorax sp. PBS-H4 [LR594675]
3367547
3367474
-
Cys
GCA
-
¡û
>C211132290
CP060295
Betaproteobacteria
Variovorax sp. PAMC26660 [CP060295]
7069649
7069576
-
Cys
GCA
-
¡û
>C211274653
CP070343
Betaproteobacteria
Variovorax sp. PDNC026 [CP070343]
3683993
3684066
+
Cys
GCA
-
¡û
>W2110748882
MOWM01000026
Betaproteobacteria
Variovorax sp. E3 [MOWM]
61229
61302
+
Cys
GCA
[ENA]
¡û
>C241251442
CP123990
Betaproteobacteria
Variovorax paradoxus MGMM5 [CP123990]
2598407
2598334
-
Cys
GCA
-
¡û
>C241342681
CP138515
Betaproteobacteria
Variovorax paradoxus 2u118 [CP138515]
3257545
3257472
-
Cys
GCA
-
¡û
>C241380134
LR594662
Betaproteobacteria
Variovorax sp. RA8 [LR594662]
3489596
3489523
-
Cys
GCA
-
¡û
>C241380148
LR594666
Betaproteobacteria
Variovorax sp. SRS16 [LR594666]
2467396
2467469
+
Cys
GCA
-
¡û
>C241380226
LR594689
Betaproteobacteria
Variovorax sp. WDL1 [LR594689]
54402
54329
-
Cys
GCA
-
¡û
>W1610072160
BCUS01000047
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
13462
13389
-
Cys
GCA
[ENA]
¡û
>W1610072200
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
63002
62929
-
Cys
GCA
[ENA]
¡û
>W1610735755
LMMT01000015
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
52983
52910
-
Cys
GCA
[ENA]
¡û
>W1610735850
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
887643
887716
+
Cys
GCA
[ENA]
¡û
>W1710069362
BCUS01000047
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
13462
13389
-
Cys
GCA
[ENA]
¡û
>W1710069402
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
63002
62929
-
Cys
GCA
[ENA]
¡û
>W1710506200
FMUJ01000003
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
972405
972332
-
Cys
GCA
[ENA]
¡û
>W1710517950
FNDR01000005
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
517623
517696
+
Cys
GCA
[ENA]
¡û
>W1710547369
FOCW01000001
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
1225196
1225269
+
Cys
GCA
[ENA]
¡û
>W1710554278
FOII01000001
Betaproteobacteria
Variovorax sp. OV084 [FOII]
378225
378298
+
Cys
GCA
[ENA]
¡û
>W1710558160
FOLP01000006
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
297948
298021
+
Cys
GCA
[ENA]
¡û
>W1710572130
FOWL01000008
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
299209
299282
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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