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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477496 (71 seq.)
>W1711357133
MDHA01000046
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
13144
13071
-
Cys
GCA
[ENA]
¡û
>W1711388519
MEHS01000003
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
12317
12244
-
Cys
GCA
[ENA]
¡û
>W1711388562
MEHT01000007
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
71442
71515
+
Cys
GCA
[ENA]
¡û
>W1711709200
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3341883
3341956
+
Cys
GCA
[ENA]
¡û
>W1711709302
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
47099
47026
-
Cys
GCA
[ENA]
¡û
>WENV180049576
MPLU02070291
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
8695
8768
+
Cys
GCA
[ENA]
¡û
>WENV180104191
OAPB01116098
[OAPB] marine metagenome; Sterile flask
7
80
+
Cys
GCA
[ENA]
¡û
>WENV180209739
OBAL01017630
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
9
82
+
Cys
GCA
[ENA]
¡û
>WENV180357282
OBNN01000667
[OBNN] marine metagenome; Coastal water
2688
2761
+
Cys
GCA
[ENA]
¡û
>WENV180395656
OBPT01066002
[OBPT] marine metagenome; ENVO:00002010 seawater
281
208
-
Cys
GCA
[ENA]
¡û
>W141082521
AUNB01000073
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
5861
5788
-
Cys
GCA
[ENA]
¡û
>W08005902
ABIG01000002
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
471103
471176
+
Cys
GCA
[ENA]
¡û
>W08011122
ABSH01000028
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
196102
196175
+
Cys
GCA
[ENA]
¡û
>WENV181322773
OFKU01014962
[OFKU] marine metagenome; sea ice
142
215
+
Cys
GCA
[ENA]
¡û
>W141151722
AXBG01000026
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
57544
57617
+
Cys
GCA
[ENA]
¡û
>WENV182541766
OJAU01001247
[OJAU] seawater metagenome; Sea water
1154
1081
-
Cys
GCA
[ENA]
¡û
>WENV182543914
OJBD01001040
[OJBD] seawater metagenome; Sea water
3204
3131
-
Cys
GCA
[ENA]
¡û
>WENV182546784
OJBP01002968
[OJBP] seawater metagenome; Sea water
3020
3093
+
Cys
GCA
[ENA]
¡û
>WENV182547140
OJBR01002138
[OJBR] seawater metagenome; Sea water
362
435
+
Cys
GCA
[ENA]
¡û
>WENV182547775
OJBT01003675
[OJBT] seawater metagenome; Sea water
615
542
-
Cys
GCA
[ENA]
¡û
>WENV182547984
OJBU01007904
[OJBU] seawater metagenome; Sea water
476
549
+
Cys
GCA
[ENA]
¡û
>WENV182549506
OJBY01001506
[OJBY] seawater metagenome; Sea water
7469
7542
+
Cys
GCA
[ENA]
¡û
>WENV182549924
OJBZ01000476
[OJBZ] seawater metagenome; Sea water
10131
10058
-
Cys
GCA
[ENA]
¡û
>WENV182555469
OJDA01002617
[OJDA] seawater metagenome; Sea water
128
55
-
Cys
GCA
[ENA]
¡û
>WENV182584754
OJHG01008384
[OJHG] seawater metagenome; Sea water
484
557
+
Cys
GCA
[ENA]
¡û
>WENV182586048
OJHJ01000494
[OJHJ] seawater metagenome; Sea water
3927
3854
-
Cys
GCA
[ENA]
¡û
>WENV182587432
OJHM01006054
[OJHM] seawater metagenome; Sea water
589
662
+
Cys
GCA
[ENA]
¡û
>WENV182593086
OJIS01040091
[OJIS] seawater metagenome; Sea water
322
395
+
Cys
GCA
[ENA]
¡û
>WENV183057476
OLHL01003255
[OLHL] seawater metagenome; Sea water
137
64
-
Cys
GCA
[ENA]
¡û
>WENV183617007
OOEE01027555
[OOEE] marine metagenome; sea ice
417
490
+
Cys
GCA
[ENA]
¡û
>WENV183628355
OOGN01016477
[OOGN] marine metagenome; sea ice
626
699
+
Cys
GCA
[ENA]
¡û
>WENV170152337
CEOE01091684
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
735
662
-
Cys
GCA
[ENA]
¡û
>WENV170537282
CEWQ01051817
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24
97
+
Cys
GCA
[ENA]
¡û
>WENV170572143
FLOH01000559
[FLOH] marine metagenome; water
69680
69753
+
Cys
GCA
[ENA]
¡û
>WENV170579062
FUFK010037888
[FUFK] metagenome; unknown
119785
119712
-
Cys
GCA
[ENA]
¡û
>WENV170591535
FUFK010779221
[FUFK] metagenome; unknown
2159
2232
+
Cys
GCA
[ENA]
¡û
>WENV170683225
LFIK01007366
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
53
126
+
Cys
GCA
[ENA]
¡û
>WENV170818474
MDSX01072413
[MDSX] marine metagenome; seawater
615
688
+
Cys
GCA
[ENA]
¡û
>C181049355
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2100404
2100477
+
Cys
GCA
-
¡û
>W141564897
JIBC01000006
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
16655
16582
-
Cys
GCA
[ENA]
¡û
>W09112284
ABXS01000051
Alphaproteobacteria
Roseobacter sp. GAI101 [ABXS]
67376
67449
+
Cys
GCA
[ENA]
¡û
>W1810685909
QKZQ01000004
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
198918
198845
-
Cys
GCA
[ENA]
¡û
>W1810722975
QNVX01000031
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
76219
76292
+
Cys
GCA
[ENA]
¡û
>W2010913338
MUAV01000022
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
2196
2123
-
Cys
GCA
[ENA]
¡û
>W2011355442
RAQK01000001
Alphaproteobacteria
Sulfitobacter guttiformis DSM 11458 [RAQK]
502164
502237
+
Cys
GCA
[ENA]
¡û
>W2011633414
SMFP01000012
Alphaproteobacteria
Sulfitobacter sp. S4J41 [SMFP]
102145
102072
-
Cys
GCA
[ENA]
¡û
>W2011642277
SMZO01000026
Alphaproteobacteria
Rhodobacteraceae bacterium SM1902 [SMZO]
6454
6381
-
Cys
GCA
[ENA]
¡û
>W2011654717
SOBH01000002
Alphaproteobacteria
Litoreibacter halocynthiae DSM 29467 [SOBH]
428926
428999
+
Cys
GCA
[ENA]
¡û
>W2011657693
SODJ01000008
Alphaproteobacteria
Rhodobaca barguzinensis DSM 19920 [SODJ]
116500
116573
+
Cys
GCA
[ENA]
¡û
>W2011658545
SOEB01000020
Alphaproteobacteria
Rhodovulum visakhapatnamense JA181 [SOEB]
76563
76636
+
Cys
GCA
[ENA]
¡û
>W2011962212
VATA01000042
Alphaproteobacteria
Poseidonocella sp. HB161398 [VATA]
58489
58562
+
Cys
GCA
[ENA]
¡û
>W2012022118
VFPT01000001
Alphaproteobacteria
Roseinatronobacter monicus DSM 18423 [VFPT]
538469
538396
-
Cys
GCA
[ENA]
¡û
>W2110068930
BPES01000003
Alphaproteobacteria
Roseobacter sp. OBYS 0001 [BPES]
434668
434595
-
Cys
GCA
[ENA]
¡û
>W2110240213
JACNMM010000004
Alphaproteobacteria
Oceaniglobus trochenteri G4 [JACNMM]
4199
4126
-
Cys
GCA
[ENA]
¡û
>W2110447481
JAESIL010000023
Alphaproteobacteria
Rhodovulum visakhapatnamense AB19 [JAESIL]
152
79
-
Cys
GCA
[ENA]
¡û
>W2110447528
JAESIM010000031
Alphaproteobacteria
Rhodovulum visakhapatnamense AB26 [JAESIM]
152
79
-
Cys
GCA
[ENA]
¡û
>W2110661434
JAHXRL010000003
Alphaproteobacteria
Sulfitobacter sp. CW3 [JAHXRL]
452977
453050
+
Cys
GCA
[ENA]
¡û
>W2110661621
JAHXRP010000010
Alphaproteobacteria
Roseovarius mucosus Rose1 [JAHXRP]
88800
88873
+
Cys
GCA
[ENA]
¡û
>C231169567
CP081116
Alphaproteobacteria
Sulfitobacter pontiacus W028 [CP081116]
2571188
2571115
-
Cys
GCA
-
¡û
>C241137586
CP049811
Alphaproteobacteria
Pontibrevibacter nitratireducens ALG8 [CP049811]
1845752
1845679
-
Cys
GCA
-
¡û
>C11118668
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2942316
2942389
+
Cys
GCA
[Ensembl]
¡û
>W1511479481
JWIE01000160
Alphaproteobacteria
Falsihalocynthiibacter arcticus PAMC 20958 [JWIE]
52811
52738
-
Cys
GCA
[ENA]
¡û
>C161087786
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
4040138
4040211
+
Cys
GCA
[Ensembl]
¡û
>W1610014773
AONH01000006
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
53793
53720
-
Cys
GCA
[ENA]
¡û
>W1611013298
LXYK01000041
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
22017
21944
-
Cys
GCA
[ENA]
¡û
>W1611032209
LZFQ01000034
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
25464
25537
+
Cys
GCA
[ENA]
¡û
>W1710011664
AONH01000006
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
53793
53720
-
Cys
GCA
[ENA]
¡û
>W1710524966
FNJD01000014
Alphaproteobacteria
Sulfitobacter litoralis [FNJD]
91966
92039
+
Cys
GCA
[ENA]
¡û
>W1710528239
FNNB01000001
Alphaproteobacteria
Sulfitobacter pontiacus [FNNB]
434504
434431
-
Cys
GCA
[ENA]
¡û
>W1710577518
FPAW01000012
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
73177
73104
-
Cys
GCA
[ENA]
¡û
>W1710583497
FQUV01000003
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
457840
457767
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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