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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480558 (57 seq.)
>W1710875546
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
525169
525096
-
Cys
GCA
[ENA]
¡û
>W131104592
APCS01000086
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
10356
10283
-
Cys
GCA
[ENA]
¡û
>W131176788
ARKH01000115
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
226225
226152
-
Cys
GCA
[ENA]
¡û
>W131178658
ARLS01000046
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
125392
125465
+
Cys
GCA
[ENA]
¡û
>W131213887
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1813865
1813938
+
Cys
GCA
[ENA]
¡û
>W131237095
AUMV01000007
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
44325
44252
-
Cys
GCA
[ENA]
¡û
>W1711708237
MSTI01000030
Deinococcota
Deinococcus marmoris [MSTI]
25698
25625
-
Cys
GCA
[ENA]
¡û
>W1711743942
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
594051
593978
-
Cys
GCA
[ENA]
¡û
>W1712080645
NHMK01000009
Deinococcota
Deinococcus indicus [NHMK]
55407
55480
+
Cys
GCA
[ENA]
¡û
>C007753
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
1599719
1599646
-
Cys
GCA
[Ensembl]
¡û
>C007936
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
576883
576956
+
Cys
GCA
[Ensembl]
¡û
>WENV180231912
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV180232921
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV180569638
OCLR01000256
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
973
1046
+
Cys
GCA
[ENA]
¢þ
>WENV180570794
OCLS01000586
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
1026
1099
+
Cys
GCA
[ENA]
¢þ
>WENV180571281
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV180573520
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV180639593
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV180640521
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
119114
119041
-
Cys
GCA
[ENA]
¢þ
>WENV181227874
OFDN01065580
[OFDN] hot springs metagenome; Water
785
712
-
Cys
GCA
[ENA]
¢þ
>W141154771
AXLL01000050
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
7220
7147
-
Cys
GCA
[ENA]
¡û
>W141169916
AXWT01000017
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
91202
91129
-
Cys
GCA
[ENA]
¡û
>C181134289
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
713961
714034
+
Cys
GCA
-
¡û
>C181179548
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
753921
753994
+
Cys
GCA
-
¡û
>C181185081
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
1029097
1029170
+
Cys
GCA
-
¡û
>C181196478
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1707278
1707205
-
Cys
GCA
-
¡û
>C191018461
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2192170
2192097
-
Cys
GCA
-
¡û
>W141525677
JHAC01000017
Deinococcota
Deinococcus phoenicis [JHAC]
175155
175228
+
Cys
GCA
[ENA]
¡û
>C191121228
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
1694629
1694556
-
Cys
GCA
-
¡û
>W141561448
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
119406
119333
-
Cys
GCA
[ENA]
¡û
>W141702051
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
119291
119218
-
Cys
GCA
[ENA]
¡û
>W141711945
JMQF01000031
Deinococcota
Deinococcus sp. RL [JMQF]
76511
76438
-
Cys
GCA
[ENA]
¡û
>W09102000
AAHE01000004
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
78965
79038
+
Cys
GCA
[ENA]
¡û
>W141731131
JNIV01000035
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
2771
2844
+
Cys
GCA
[ENA]
¡û
>W141731177
JNIW01000021
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
26719
26792
+
Cys
GCA
[ENA]
¡û
>C09103896
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
761042
761115
+
Cys
GCA
[Ensembl]
¡û
>W1911597494
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
24689
24762
+
Cys
GCA
[ENA]
¡û
>W1911788251
QYCQ01000001
Deinococcota
Deinococcus sp. RM [QYCQ]
8168
8241
+
Cys
GCA
[ENA]
¡û
>W1911802488
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
669337
669410
+
Cys
GCA
[ENA]
¡û
>W1810238344
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2322805
2322732
-
Cys
GCA
[ENA]
¡û
>W1810423337
PYSV01000009
Deinococcota
Deinococcus arcticus OD32 [PYSV]
129715
129788
+
Cys
GCA
[ENA]
¡û
>C151063649
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
3480965
3480892
-
Cys
GCA
[Ensembl]
¡û
>C151081900
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
2805329
2805402
+
Cys
GCA
[Ensembl]
¡û
>C10105338
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
576883
576956
+
Cys
GCA
[Ensembl]
¡û
>C11107250
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
758818
758745
-
Cys
GCA
[Ensembl]
¡û
>C11107265
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
576883
576956
+
Cys
GCA
[Ensembl]
¡û
>C121002061
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1418987
1419060
+
Cys
GCA
[Ensembl]
¡û
>C161034736
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
867285
867358
+
Cys
GCA
[Ensembl]
¡û
>C161061586
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
957033
957106
+
Cys
GCA
[Ensembl]
¡û
>C161082983
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2148699
2148626
-
Cys
GCA
-
¡û
>W1610061595
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2332564
2332491
-
Cys
GCA
[ENA]
¡û
>W1610638992
LIYN01000287
Deinococcota
Deinococcus sp. UR1 [LIYN]
2954
2881
-
Cys
GCA
[ENA]
¡û
>W1610737892
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
525169
525096
-
Cys
GCA
[ENA]
¡û
>W1710059260
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2332564
2332491
-
Cys
GCA
[ENA]
¡û
>W1710542262
FNZA01000003
Deinococcota
Deinococcus reticulitermitis [FNZA]
239913
239986
+
Cys
GCA
[ENA]
¡û
>W1710605332
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
1850337
1850264
-
Cys
GCA
[ENA]
¡û
>W1710774886
LIYN01000287
Deinococcota
Deinococcus sp. UR1 [LIYN]
2954
2881
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK