This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485658 (35 seq.)
>C025667
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
511058
510983
-
Lys
TTT
-
¡û
>W141070749
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
54260
54335
+
Lys
TTT
[ENA]
¡û
>W141082657
AUNF01000047
Thermotogota
Thermotoga sp. A7A [AUNF]
27575
27650
+
Lys
TTT
[ENA]
¡û
>WENV181409055
OGCH01041006
[OGCH] hot springs metagenome; hot springs
259
184
-
Lys
TTT
[ENA]
¢þ
>C08010881
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
442522
442597
+
Lys
TTT
[Ensembl]
¡û
>WENV170675922
LDZQ01001394
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2350
2425
+
Lys
TTT
[ENA]
¢þ
>WENV170676163
LDZR01001289
[LDZR] terrestrial metagenome; oil reservoir sample K2
9016
8941
-
Lys
TTT
[ENA]
¢þ
>WENV170676544
LDZS01001172
[LDZS] terrestrial metagenome; oil reservoir sample K3
1648
1723
+
Lys
TTT
[ENA]
¢þ
>W09107442
ABIJ01000013
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
5463
5388
-
Lys
TTT
[ENA]
¡û
>C141011512
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
434558
434633
+
Lys
TTT
-
¡û
>W1910635453
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
61615
61540
-
Lys
TTT
[ENA]
¡û
>W1910635508
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
279643
279568
-
Lys
TTT
[ENA]
¡û
>C09110627
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
177811
177886
+
Lys
TTT
[Ensembl]
¡û
>C151004257
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
442397
442472
+
Lys
TTT
[Ensembl]
¡û
>C151004303
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
433836
433911
+
Lys
TTT
[Ensembl]
¡û
>C151030617
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
455257
455332
+
Lys
TTT
[Ensembl]
¡û
>C151074627
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
511064
510989
-
Lys
TTT
[Ensembl]
¡û
>C151076981
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
511064
510989
-
Lys
TTT
[Ensembl]
¡û
>C151077027
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
511064
510989
-
Lys
TTT
[Ensembl]
¡û
>W10105837
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86322
86247
-
Lys
TTT
[ENA]
¡û
>C10113516
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
265321
265246
-
Lys
TTT
[Ensembl]
¡û
>W11108157
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86322
86247
-
Lys
TTT
[ENA]
¡û
>W11180777
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
822457
822532
+
Lys
TTT
[ENA]
¡û
>W121062169
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
54498
54423
-
Lys
TTT
[ENA]
¡û
>C131012517
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
511064
510989
-
Lys
TTT
-
¡û
>W1610540342
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15102
15177
+
Lys
TTT
[ENA]
¡û
>W1610540398
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276340
276415
+
Lys
TTT
[ENA]
¡û
>W1610540433
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252669
252744
+
Lys
TTT
[ENA]
¡û
>W1610540478
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86475
86400
-
Lys
TTT
[ENA]
¡û
>W1610612909
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
9016
8941
-
Lys
TTT
[ENA]
¡û
>W1710643363
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15102
15177
+
Lys
TTT
[ENA]
¡û
>W1710643419
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276340
276415
+
Lys
TTT
[ENA]
¡û
>W1710643454
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252669
252744
+
Lys
TTT
[ENA]
¡û
>W1710643499
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86475
86400
-
Lys
TTT
[ENA]
¡û
>W1710734191
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
9016
8941
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK