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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485660 (38 seq.)
>C025638
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
474103
474175
+
Met
CAT
-
¡û
>C025807
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
461406
461334
-
Met
CAT
[Ensembl]
¡û
>W141070755
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
91170
91098
-
Met
CAT
[ENA]
¡û
>WENV181408956
OGCH01027546
[OGCH] hot springs metagenome; hot springs
793
721
-
Met
CAT
[ENA]
¢þ
>C08010918
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
479467
479395
-
Met
CAT
[Ensembl]
¡û
>WENV170676168
LDZR01001290
[LDZR] terrestrial metagenome; oil reservoir sample K2
5764
5836
+
Met
CAT
[ENA]
¢þ
>WENV170676753
LDZS01002155
[LDZS] terrestrial metagenome; oil reservoir sample K3
7476
7548
+
Met
CAT
[ENA]
¢þ
>W09106568
AAWB01000023
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29762
29690
-
Met
CAT
[ENA]
¡û
>W09107436
ABIJ01000010
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
27928
27856
-
Met
CAT
[ENA]
¡û
>W09112228
ABXR01000015
Thermotogota
Marinitoga piezophila KA3 [ABXR]
50948
51020
+
Met
CAT
[ENA]
¡û
>C141011549
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
471514
471442
-
Met
CAT
-
¡û
>W1910635444
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
24722
24794
+
Met
CAT
[ENA]
¡û
>W1910635502
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
242661
242733
+
Met
CAT
[ENA]
¡û
>C09110670
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
214729
214657
-
Met
CAT
[Ensembl]
¡û
>C151004294
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
479330
479258
-
Met
CAT
[Ensembl]
¡û
>C151004340
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
470821
470749
-
Met
CAT
[Ensembl]
¡û
>C151030654
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
492184
492112
-
Met
CAT
[Ensembl]
¡û
>C151074598
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
474108
474180
+
Met
CAT
[Ensembl]
¡û
>C151076952
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
474108
474180
+
Met
CAT
[Ensembl]
¡û
>C151076998
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
474108
474180
+
Met
CAT
[Ensembl]
¡û
>W10105832
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49372
49444
+
Met
CAT
[ENA]
¡û
>C10113479
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
228372
228444
+
Met
CAT
[Ensembl]
¡û
>W11108152
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49372
49444
+
Met
CAT
[ENA]
¡û
>W11180782
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
859413
859341
-
Met
CAT
[ENA]
¡û
>W121062163
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
17565
17637
+
Met
CAT
[ENA]
¡û
>C131012488
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
474108
474180
+
Met
CAT
-
¡û
>W1610540348
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52088
52016
-
Met
CAT
[ENA]
¡û
>W1610540403
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313307
313235
-
Met
CAT
[ENA]
¡û
>W1610540439
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289655
289583
-
Met
CAT
[ENA]
¡û
>W1610540472
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49489
49561
+
Met
CAT
[ENA]
¡û
>W1610612914
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5764
5836
+
Met
CAT
[ENA]
¡û
>W1610613143
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7476
7548
+
Met
CAT
[ENA]
¡û
>W1710643369
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52088
52016
-
Met
CAT
[ENA]
¡û
>W1710643424
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313307
313235
-
Met
CAT
[ENA]
¡û
>W1710643460
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289655
289583
-
Met
CAT
[ENA]
¡û
>W1710643493
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49489
49561
+
Met
CAT
[ENA]
¡û
>W1710734196
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5764
5836
+
Met
CAT
[ENA]
¡û
>W1710734350
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7476
7548
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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