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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485662 (37 seq.)
>C025641
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
474550
474625
+
Trp
CCA
-
¡û
>C025810
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
460959
460884
-
Trp
CCA
[Ensembl]
¡û
>W141070758
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
90717
90642
-
Trp
CCA
[ENA]
¡û
>WENV181408959
OGCH01027546
[OGCH] hot springs metagenome; hot springs
346
271
-
Trp
CCA
[ENA]
¢þ
>C08010921
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
479020
478948
-
Trp
CCA
[Ensembl]
¡û
>WENV170676171
LDZR01001290
[LDZR] terrestrial metagenome; oil reservoir sample K2
6212
6287
+
Trp
CCA
[ENA]
¢þ
>WENV170676756
LDZS01002155
[LDZS] terrestrial metagenome; oil reservoir sample K3
7924
7999
+
Trp
CCA
[ENA]
¢þ
>W09106571
AAWB01000023
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29315
29240
-
Trp
CCA
[ENA]
¡û
>W09107439
ABIJ01000010
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
27481
27406
-
Trp
CCA
[ENA]
¡û
>W09112231
ABXR01000016
Thermotogota
Marinitoga piezophila KA3 [ABXR]
49
124
+
Trp
CCA
[ENA]
¡û
>C141011552
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
471067
470992
-
Trp
CCA
-
¡û
>W1910635447
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
25175
25250
+
Trp
CCA
[ENA]
¡û
>C09110673
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
214276
214201
-
Trp
CCA
[Ensembl]
¡û
>C151004297
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
478883
478808
-
Trp
CCA
[Ensembl]
¡û
>C151004343
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
470374
470299
-
Trp
CCA
[Ensembl]
¡û
>C151030657
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
491731
491656
-
Trp
CCA
[Ensembl]
¡û
>C151074601
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
474555
474630
+
Trp
CCA
[Ensembl]
¡û
>C151076955
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
474555
474630
+
Trp
CCA
[Ensembl]
¡û
>C151077001
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
474555
474630
+
Trp
CCA
[Ensembl]
¡û
>W10105835
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49819
49894
+
Trp
CCA
[ENA]
¡û
>C10113482
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
228819
228894
+
Trp
CCA
[Ensembl]
¡û
>W11108155
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49819
49894
+
Trp
CCA
[ENA]
¡û
>W11180785
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
858966
858891
-
Trp
CCA
[ENA]
¡û
>W121062166
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
18012
18087
+
Trp
CCA
[ENA]
¡û
>C131012491
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
474555
474630
+
Trp
CCA
-
¡û
>W1610540351
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51641
51566
-
Trp
CCA
[ENA]
¡û
>W1610540406
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
312860
312785
-
Trp
CCA
[ENA]
¡û
>W1610540442
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289208
289133
-
Trp
CCA
[ENA]
¡û
>W1610540475
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49936
50011
+
Trp
CCA
[ENA]
¡û
>W1610612917
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6212
6287
+
Trp
CCA
[ENA]
¡û
>W1610613146
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7924
7999
+
Trp
CCA
[ENA]
¡û
>W1710643372
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
51641
51566
-
Trp
CCA
[ENA]
¡û
>W1710643427
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
312860
312785
-
Trp
CCA
[ENA]
¡û
>W1710643463
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289208
289133
-
Trp
CCA
[ENA]
¡û
>W1710643496
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49936
50011
+
Trp
CCA
[ENA]
¡û
>W1710734199
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
6212
6287
+
Trp
CCA
[ENA]
¡û
>W1710734353
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7924
7999
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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