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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494604 (75 seq.)
>W1710863614
LMFG01000002
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
279677
279604
-
Gly
TCC
[ENA]
¡û
>W1710868769
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
510012
509939
-
Gly
TCC
[ENA]
¡û
>W1710877694
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
268290
268361
+
Gly
TCC
[ENA]
¡û
>W1710914204
LNTD01000273
Actinomycetota
Cellulomonas sp. B6 [LNTD]
13037
13110
+
Gly
TCC
[ENA]
¡û
>W1711080857
LSRJ01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
36906
36977
+
Gly
TCC
[ENA]
¡û
>W131227080
AUEW01000004
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
447257
447184
-
Gly
TCC
[ENA]
¡û
>W1711503141
MKTI01000009
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
282492
282419
-
Gly
TCC
[ENA]
¡û
>W1712056165
NFZP01000033
Actinomycetota
Cellulomonas iranensis [NFZP]
1715
1788
+
Gly
TCC
[ENA]
¡û
>W1712061747
NGFP01000042
Actinomycetota
Streptosporangium minutum M26 [NGFP]
10831
10902
+
Gly
TCC
[ENA]
¡û
>C171130968
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
239263
239192
-
Gly
TCC
-
¡û
>WENV180096861
MTBK01152461
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
474
547
+
Gly
TCC
[ENA]
¢þ
>W141135818
AWEV01000287
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
12296
12367
+
Gly
TCC
[ENA]
¡û
>WENV183727050
PJTO01002803
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
385
312
-
Gly
TCC
[ENA]
¢þ
>WENV183728271
PJTQ01000008
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
253170
253243
+
Gly
TCC
[ENA]
¢þ
>WENV183731529
PJTT01000016
[PJTT] soil metagenome; Soil (2) enriched on wood chips
180671
180598
-
Gly
TCC
[ENA]
¢þ
>WENV183731915
PJTU01000007
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
180671
180598
-
Gly
TCC
[ENA]
¢þ
>WENV183732214
PJTW01000004
[PJTW] soil metagenome; Soil enriched on wood chips
180671
180598
-
Gly
TCC
[ENA]
¢þ
>WENV183736314
PJUC01000581
[PJUC] soil metagenome; Soil enriched on filter paper
2593
2664
+
Gly
TCC
[ENA]
¢þ
>WENV183743029
PJUJ01000010
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
180671
180598
-
Gly
TCC
[ENA]
¢þ
>WENV183744560
PJUL01000011
[PJUL] feces metagenome; Chicken feces enriched on filter paper
180671
180598
-
Gly
TCC
[ENA]
¢þ
>W141428876
JEOE01000011
Actinomycetota
Cellulomonas sp. HZM [JEOE]
6340
6413
+
Gly
TCC
[ENA]
¡û
>WENV170646288
JQGG01138102
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
147
220
+
Gly
TCC
[ENA]
¢þ
>WENV170978809
MTKZ01062797
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
997
1070
+
Gly
TCC
[ENA]
¢þ
>C191210077
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1552448
1552376
-
Gly
TCC
-
¡û
>W09110036
ABUU01000031
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
11272
11343
+
Gly
TCC
[ENA]
¡û
>W141759653
JNZM01001988
Actinomycetota
Microbispora rosea subsp. rosea [JNZM]
1493
1422
-
Gly
TCC
[ENA]
¡û
>W141759865
JNZQ01000020
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
12185
12112
-
Gly
TCC
[ENA]
¡û
>W141765924
JODQ01000016
Actinomycetota
Herbidospora cretacea [JODQ]
113307
113380
+
Gly
TCC
[ENA]
¡û
>W141767465
JOEQ01000021
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
10012
10083
+
Gly
TCC
[ENA]
¡û
>W1910155466
BIMR01000028
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
13274
13345
+
Gly
TCC
[ENA]
¡û
>W1910181031
BJLP01000005
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
90087
90159
+
Gly
TCC
[ENA]
¡û
>W1910181076
BJLQ01000003
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
246522
246449
-
Gly
TCC
[ENA]
¡û
>W1910547918
FZOD01000110
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
14056
14127
+
Gly
TCC
[ENA]
¡û
>W1911768077
QXFN01000005
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
266653
266726
+
Gly
TCC
[ENA]
¡û
>W1810701596
QMEY01000011
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
11703
11776
+
Gly
TCC
[ENA]
¡û
>W1810735353
QOIL01000026
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
134960
134889
-
Gly
TCC
[ENA]
¡û
>W1810918544
QWKP01000208
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
15255
15184
-
Gly
TCC
[ENA]
¡û
>C10112420
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
8054738
8054809
+
Gly
TCC
[Ensembl]
¡û
>C11105048
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1552424
1552351
-
Gly
TCC
[Ensembl]
¡û
>C11105126
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
2377769
2377842
+
Gly
TCC
[Ensembl]
¡û
>W1511595523
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
462549
462476
-
Gly
TCC
[ENA]
¡û
>W1511683456
LFKW01000046
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
11277
11204
-
Gly
TCC
[ENA]
¡û
>W1610050944
BBGI01000527
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
1940
1869
-
Gly
TCC
[ENA]
¡û
>W1610051562
BBGZ01000484
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
959
1032
+
Gly
TCC
[ENA]
¡û
>W1610057185
BBXC01000026
Actinomycetota
Herbidospora sakaeratensis [BBXC]
122508
122581
+
Gly
TCC
[ENA]
¡û
>W1610057205
BBXD01000010
Actinomycetota
Herbidospora mongoliensis [BBXD]
650631
650702
+
Gly
TCC
[ENA]
¡û
>W1610057573
BBYJ01000031
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
10029
9958
-
Gly
TCC
[ENA]
¡û
>W1610057700
BBYL01000036
Actinomycetota
Microtetraspora glauca [BBYL]
9766
9695
-
Gly
TCC
[ENA]
¡û
>W1610057737
BBYM01000021
Actinomycetota
Microtetraspora niveoalba [BBYM]
137453
137524
+
Gly
TCC
[ENA]
¡û
>W1610060598
BCBX01000030
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
11133
11062
-
Gly
TCC
[ENA]
¡û
>W1610068103
BCRB01000038
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
14122
14049
-
Gly
TCC
[ENA]
¡û
>W1610068416
BCRI01000039
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
43534
43605
+
Gly
TCC
[ENA]
¡û
>W1610081029
BDCX01000020
Actinomycetota
Planomonospora sphaerica [BDCX]
131411
131340
-
Gly
TCC
[ENA]
¡û
>W1610526125
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
6298056
6298127
+
Gly
TCC
[ENA]
¡û
>W1610731115
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
510012
509939
-
Gly
TCC
[ENA]
¡û
>W1610740040
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
268290
268361
+
Gly
TCC
[ENA]
¡û
>W1610772563
LNTD01000273
Actinomycetota
Cellulomonas sp. B6 [LNTD]
13037
13110
+
Gly
TCC
[ENA]
¡û
>W1610919724
LSRJ01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
36906
36977
+
Gly
TCC
[ENA]
¡û
>W1710047343
BBGI01000527
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
1940
1869
-
Gly
TCC
[ENA]
¡û
>W1710047940
BBGZ01000484
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
959
1032
+
Gly
TCC
[ENA]
¡û
>W1710053884
BBXC01000026
Actinomycetota
Herbidospora sakaeratensis [BBXC]
122508
122581
+
Gly
TCC
[ENA]
¡û
>W1710053904
BBXD01000010
Actinomycetota
Herbidospora mongoliensis [BBXD]
650631
650702
+
Gly
TCC
[ENA]
¡û
>W1710054272
BBYJ01000031
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
10029
9958
-
Gly
TCC
[ENA]
¡û
>W1710054399
BBYL01000036
Actinomycetota
Microtetraspora glauca [BBYL]
9766
9695
-
Gly
TCC
[ENA]
¡û
>W1710054436
BBYM01000021
Actinomycetota
Microtetraspora niveoalba [BBYM]
137453
137524
+
Gly
TCC
[ENA]
¡û
>W1710057853
BCBX01000030
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
11133
11062
-
Gly
TCC
[ENA]
¡û
>W1710065476
BCRB01000038
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
14122
14049
-
Gly
TCC
[ENA]
¡û
>W1710065789
BCRI01000039
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
43534
43605
+
Gly
TCC
[ENA]
¡û
>W1710079680
BDCX01000020
Actinomycetota
Planomonospora sphaerica [BDCX]
131411
131340
-
Gly
TCC
[ENA]
¡û
>W1710516395
FNCN01000057
Actinomycetota
Sinosporangium album [FNCN]
10134
10207
+
Gly
TCC
[ENA]
¡û
>W1710526564
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
5813035
5813106
+
Gly
TCC
[ENA]
¡û
>W1710534657
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
2679978
2680049
+
Gly
TCC
[ENA]
¡û
>W1710565056
FOQY01000017
Actinomycetota
Streptosporangium canum [FOQY]
442
513
+
Gly
TCC
[ENA]
¡û
>W1710566753
FOSE01000004
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
328920
328847
-
Gly
TCC
[ENA]
¡û
>W1710627363
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
6298056
6298127
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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