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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506607 (32 seq.)
>C171001929
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
2132458
2132533
+
Lys
CTT
-
¡û
>W131159259
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
57723
57650
-
Lys
CTT
[ENA]
¡û
>WENV181212243
OFBN01000793
[OFBN] metagenome; hydrothermal vent
1406
1479
+
Lys
CTT
[ENA]
¢þ
>WENV181212328
OFBO01000645
[OFBO] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>WENV181212403
OFBP01000963
[OFBP] metagenome; hydrothermal vent
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181212485
OFBQ01000992
[OFBQ] metagenome; hydrothermal vent
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181212555
OFBR01000756
[OFBR] metagenome; hydrothermal vent
162
89
-
Lys
CTT
[ENA]
¢þ
>WENV181212647
OFBS01001671
[OFBS] metagenome; hydrothermal vent
667
740
+
Lys
CTT
[ENA]
¢þ
>WENV181212713
OFBT01000722
[OFBT] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>W141259159
CBYN010000005
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
34308
34235
-
Lys
CTT
[ENA]
¡û
>WENV170722478
LSQX01230822
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6758
6833
+
Lys
CTT
[ENA]
¢þ
>C181143890
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1848796
1848869
+
Lys
CTT
-
¡û
>W141563959
JIAJ01000003
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
68688
68613
-
Lys
CTT
[ENA]
¡û
>W09124045
ACHJ01000097
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
95
20
-
Lys
CTT
[ENA]
¡û
>W1910182659
BJNB01000075
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
330
257
-
Lys
CTT
[ENA]
¡û
>W1911179015
NQMQ01000002
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
50570
50497
-
Lys
CTT
[ENA]
¡û
>W1911243327
NSGK01000003
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
257081
257154
+
Lys
CTT
[ENA]
¡û
>W1911243393
NSGL01000002
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
55201
55128
-
Lys
CTT
[ENA]
¡û
>W1911243422
NSGM01000001
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
554102
554175
+
Lys
CTT
[ENA]
¡û
>W1911243483
NSGN01000004
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
169796
169869
+
Lys
CTT
[ENA]
¡û
>W1911243541
NSGO01000004
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
37348
37275
-
Lys
CTT
[ENA]
¡û
>W1911243618
NSGP01000022
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
28321
28248
-
Lys
CTT
[ENA]
¡û
>W1810568914
QEEY01000010
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
35865
35792
-
Lys
CTT
[ENA]
¡û
>C151007274
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
2147443
2147518
+
Lys
CTT
[Ensembl]
¡û
>C151012240
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2175714
2175787
+
Lys
CTT
[Ensembl]
¡û
>C151045686
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2320078
2320153
+
Lys
CTT
-
¡û
>C151045687
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2320241
2320316
+
Lys
CTT
-
¡û
>W1610069806
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
43855
43780
-
Lys
CTT
[ENA]
¡û
>W1610436796
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
135434
135509
+
Lys
CTT
[ENA]
¡û
>C131005399
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2515727
2515802
+
Lys
CTT
[Ensembl]
¡û
>W1710067179
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
43855
43780
-
Lys
CTT
[ENA]
¡û
>W1710436532
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
135434
135509
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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