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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50727 (68 seq.)
>W1711116088
LUAS01000111
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
37323
37410
+
Leu
TAA
[ENA]
¡û
>W1711185187
LWNE01000116
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
45443
45530
+
Leu
TAA
[ENA]
¡û
>W131159450
AQVB01000007
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
78497
78410
-
Leu
TAA
[ENA]
¡û
>W141194176
AYSV01000004
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
29792
29879
+
Leu
TAA
[ENA]
¡û
>W141200382
AYXT01000010
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
172417
172504
+
Leu
TAA
[ENA]
¡û
>WENV170691268
LFRM01388969
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9115
9028
-
Leu
TAA
[ENA]
¡û
>WENV170721859
LSQX01206574
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
51005
51092
+
Leu
TAA
[ENA]
¡û
>C181049093
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1312443
1312356
-
Leu
TAA
-
¡û
>C181049958
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1295622
1295535
-
Leu
TAA
-
¡û
>C181049995
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1378573
1378486
-
Leu
TAA
-
¡û
>C181050032
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1278749
1278662
-
Leu
TAA
-
¡û
>C181050114
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1332572
1332485
-
Leu
TAA
-
¡û
>C181152593
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1948842
1948755
-
Leu
TAA
-
¡û
>C191208081
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1341029
1340942
-
Leu
TAA
-
¡û
>W141562676
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
129059
128972
-
Leu
TAA
[ENA]
¡û
>W1910225819
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
310584
310497
-
Leu
TAA
[ENA]
¡û
>W1910891674
NEXS01000003
Betaproteobacteria
Advenella sp. S44 [NEXS]
1129991
1130078
+
Leu
TAA
[ENA]
¡û
>W1911595520
PNGK01000002
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
37695
37782
+
Leu
TAA
[ENA]
¡û
>W1810701956
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
158474
158561
+
Leu
TAA
[ENA]
¡û
>C151004939
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
2819521
2819434
-
Leu
TAA
[Ensembl]
¡û
>W2010282106
CABMIG010000004
Betaproteobacteria
Pelistega indica [CABMIG]
29792
29879
+
Leu
TAA
[ENA]
¡û
>W2010380447
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
310584
310497
-
Leu
TAA
[ENA]
¡û
>W2010471739
JAAGYR010000016
Betaproteobacteria
Pelistega sp. NLN82 [JAAGYR]
39093
39180
+
Leu
TAA
[ENA]
¡û
>W2010573934
JAAVNG010000012
Betaproteobacteria
Advenella sp. EE-W14 [JAAVNG]
252221
252134
-
Leu
TAA
[ENA]
¡û
>W2010956544
NEXS01000003
Betaproteobacteria
Advenella sp. S44 [NEXS]
1129991
1130078
+
Leu
TAA
[ENA]
¡û
>W2011204416
PNGK01000002
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
37695
37782
+
Leu
TAA
[ENA]
¡û
>W2011479890
RQSO01000012
Betaproteobacteria
Alcaligenes sp. RS4 [RQSO]
9186
9099
-
Leu
TAA
[ENA]
¡û
>W2011579747
SHKO01000001
Betaproteobacteria
Advenella incenata DSM 23814 [SHKO]
1838884
1838971
+
Leu
TAA
[ENA]
¡û
>W2011761166
UATH01000001
Betaproteobacteria
Oligella urethralis NCTC11009 [UATH]
456174
456087
-
Leu
TAA
[ENA]
¡û
>W2011833611
UGRW01000003
Betaproteobacteria
Oligella urethralis NCTC11010 [UGRW]
241189
241276
+
Leu
TAA
[ENA]
¡û
>W2011833650
UGRX01000005
Betaproteobacteria
Oligella urethralis NCTC11999 [UGRX]
2570986
2571073
+
Leu
TAA
[ENA]
¡û
>W2011834108
UGSE01000002
Betaproteobacteria
Oligella urethralis NCTC11008 [UGSE]
262746
262659
-
Leu
TAA
[ENA]
¡û
>W2011834117
UGSF01000001
Betaproteobacteria
Oligella urethralis NCTC12964 [UGSF]
712480
712567
+
Leu
TAA
[ENA]
¡û
>W2110049548
BMYS01000018
Betaproteobacteria
Advenella faeciporci KCTC 23732 [BMYS]
64005
64092
+
Leu
TAA
[ENA]
¡û
>W2110186955
JABUXU010000001
Betaproteobacteria
Advenella sp. FME57 [JABUXU]
652310
652223
-
Leu
TAA
[ENA]
¡û
>W2110431697
JAENGP010000001
Betaproteobacteria
Advenella sp. WQ 585 [JAENGP]
55612
55699
+
Leu
TAA
[ENA]
¡û
>W2110641892
JAHSPR010000004
Betaproteobacteria
Advenella alkanexedens LAM0050 [JAHSPR]
253124
253037
-
Leu
TAA
[ENA]
¡û
>C231151345
CP076334
Betaproteobacteria
Taylorella equigenitalis 85-30279 [CP076334]
1332861
1332774
-
Leu
TAA
-
¡û
>C231151382
CP076335
Betaproteobacteria
Taylorella equigenitalis 81-1173B [CP076335]
1300690
1300603
-
Leu
TAA
-
¡û
>C231151419
CP076336
Betaproteobacteria
Taylorella equigenitalis 14-137 [CP076336]
1354552
1354465
-
Leu
TAA
-
¡û
>C231151456
CP076337
Betaproteobacteria
Taylorella equigenitalis 10-281 [CP076337]
1353735
1353648
-
Leu
TAA
-
¡û
>C231151493
CP076338
Betaproteobacteria
Taylorella equigenitalis 07-224 [CP076338]
1294808
1294721
-
Leu
TAA
-
¡û
>C231152937
CP076515
Betaproteobacteria
Taylorella equigenitalis KJTE [CP076515]
1311915
1311828
-
Leu
TAA
-
¡û
>C231152974
CP076516
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP076516]
1344027
1343940
-
Leu
TAA
-
¡û
>C231633458
CP120802
Betaproteobacteria
Taylorella equigenitalis BA-2585-2-2018 [CP120802]
1297875
1297788
-
Leu
TAA
-
¡û
>C231633494
CP120803
Betaproteobacteria
Taylorella equigenitalis BA-1688-2018 [CP120803]
1297772
1297685
-
Leu
TAA
-
¡û
>C231633530
CP120804
Betaproteobacteria
Taylorella equigenitalis BA-3123-2019 [CP120804]
1298615
1298528
-
Leu
TAA
-
¡û
>C231633566
CP120805
Betaproteobacteria
Taylorella equigenitalis BA-1150-3A-2018 [CP120805]
1298995
1298908
-
Leu
TAA
-
¡û
>C231633602
CP120806
Betaproteobacteria
Taylorella equigenitalis BA-1150-4A-2018 [CP120806]
1298975
1298888
-
Leu
TAA
-
¡û
>C231633638
CP120807
Betaproteobacteria
Taylorella equigenitalis BA-4714-2019 [CP120807]
1298611
1298524
-
Leu
TAA
-
¡û
>C231633674
CP120808
Betaproteobacteria
Taylorella equigenitalis BA-146-6-2018 [CP120808]
1298600
1298513
-
Leu
TAA
-
¡û
>C231633710
CP120809
Betaproteobacteria
Taylorella equigenitalis BA-2836-2-2019 [CP120809]
1296814
1296727
-
Leu
TAA
-
¡û
>C231633746
CP120810
Betaproteobacteria
Taylorella equigenitalis BA-219-8A-2018 [CP120810]
1298602
1298515
-
Leu
TAA
-
¡û
>C231633782
CP120811
Betaproteobacteria
Taylorella equigenitalis BA-1856-2-2017 [CP120811]
1298575
1298488
-
Leu
TAA
-
¡û
>C231633818
CP120812
Betaproteobacteria
Taylorella equigenitalis BA-2524-2022 [CP120812]
1298532
1298445
-
Leu
TAA
-
¡û
>C231633854
CP120813
Betaproteobacteria
Taylorella equigenitalis CAPM-6345 [CP120813]
1298599
1298512
-
Leu
TAA
-
¡û
>C231633890
CP120814
Betaproteobacteria
Taylorella equigenitalis CAPM-6344 [CP120814]
1298839
1298752
-
Leu
TAA
-
¡û
>C241117492
CP047165
Betaproteobacteria
Pelistega ratti NLN63 [CP047165]
2072223
2072136
-
Leu
TAA
-
¡û
>W1511350692
JRMO01000002
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
254036
253949
-
Leu
TAA
[ENA]
¡û
>W1511351549
JRNI01000058
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
1896
1809
-
Leu
TAA
[ENA]
¡û
>C11122632
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
288731
288644
-
Leu
TAA
[Ensembl]
¡û
>W1511458946
JVJW01000088
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
10966
11053
+
Leu
TAA
[ENA]
¡û
>W1511461242
JVMH01000082
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
10966
11053
+
Leu
TAA
[ENA]
¡û
>W11171209
AFQG01000064
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
9819
9732
-
Leu
TAA
[ENA]
¡û
>C121009944
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1371637
1371550
-
Leu
TAA
[Ensembl]
¡û
>C121014495
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
1619244
1619331
+
Leu
TAA
[Ensembl]
¡û
>W1610606586
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
9115
9028
-
Leu
TAA
[ENA]
¡û
>W1710727873
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
9115
9028
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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