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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50867 (40 seq.)
>C171072569
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
695337
695423
+
Ser
TGA
-
¡û
>WENV180054592
MPLV02100768
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
337
251
-
Ser
TGA
[ENA]
¡û
>WENV180114951
OAPS01080510
[OAPS] marine metagenome; sea water
28
113
+
Ser
TGA
[ENA]
¡û
>WENV180362156
OBNW01049288
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
60
145
+
Ser
TGA
[ENA]
¡û
>WENV180592949
OCOW01148841
[OCOW] marine metagenome; Sterivex cartridges
141
56
-
Ser
TGA
[ENA]
¡û
>WENV181385316
OFRI01064419
[OFRI] wastewater metagenome; Exp Tend VB 90WW
366
280
-
Ser
TGA
[ENA]
¡û
>WENV170119133
CENJ01114801
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3050
2965
-
Ser
TGA
[ENA]
¡û
>WENV170134633
CENU01127829
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7838
7753
-
Ser
TGA
[ENA]
¡û
>WENV170377991
CETU01315801
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
460
+
Ser
TGA
[ENA]
¡û
>WENV170614935
FUWD012844721
[FUWD] metagenome; unknown
5246
5332
+
Ser
TGA
[ENA]
¡û
>W1810527775
QCRS01000045
Cyanobacteriota
Prochlorococcus sp. AG-463-F15 [QCRS]
6513
6427
-
Ser
TGA
[ENA]
¡û
>C151009056
CP006270
Cyanobacteriota
Synechococcus sp. KORDI-49 [CP006270]
417957
418042
+
Ser
TGA
[Ensembl]
¡û
>SRA1028253
SRR035086.285748
454 Sequencing (SRP001807)
28
114
+
Ser
TGA
[SRA]
>SRA1028730
SRR035086.412244
454 Sequencing (SRP001807)
135
49
-
Ser
TGA
[SRA]
>SRA1032279
SRR035087.594065
454 Sequencing (SRP001808)
96
10
-
Ser
TGA
[SRA]
>SRA1032544
SRR035088.42863
454 Sequencing (SRP001809)
120
34
-
Ser
TGA
[SRA]
>SRA1036195
SRR035089.467204
454 Sequencing (SRP001810)
228
142
-
Ser
TGA
[SRA]
>SRA1048210
SRR035094.129218
454 Sequencing (SRP001815)
175
89
-
Ser
TGA
[SRA]
>SRA1048256
SRR035094.135541
454 Sequencing (SRP001815)
53
139
+
Ser
TGA
[SRA]
>W2012044791
VITZ01000001
Cyanobacteriota
Synechococcus sp. Ace-Pa [VITZ]
101263
101177
-
Ser
TGA
[ENA]
¡û
>SRA1051800
SRR035098.78842
454 Sequencing (SRP001819)
115
29
-
Ser
TGA
[SRA]
>SRA1052111
SRR035098.143326
454 Sequencing (SRP001819)
333
247
-
Ser
TGA
[SRA]
>SRA1052851
SRR035098.285730
454 Sequencing (SRP001819)
204
288
+
Ser
TGA
[SRA]
>SRA1052894
SRR035098.295545
454 Sequencing (SRP001819)
218
132
-
Ser
TGA
[SRA]
>SRA1053224
SRR035098.364226
454 Sequencing (SRP001819)
100
14
-
Ser
TGA
[SRA]
>SRA1053367
SRR035098.392550
454 Sequencing (SRP001819)
162
77
-
Ser
TGA
[SRA]
>SRA1053700
SRR035098.470009
454 Sequencing (SRP001819)
50
136
+
Ser
TGA
[SRA]
>W2110080562
CAIKEC010000347
Cyanobacteriota
Synechococcus lacustris [CAIKEC]
527
441
-
Ser
TGA
[ENA]
¡û
>W2110086650
CAISRW010000357
Cyanobacteriota
Synechococcus lacustris [CAISRW]
395
309
-
Ser
TGA
[ENA]
¡û
>W2110091111
CAIZOI010000025
Cyanobacteriota
Synechococcus lacustris [CAIZOI]
56558
56472
-
Ser
TGA
[ENA]
¡û
>W2110091200
CAIZWK010000002
Cyanobacteriota
Synechococcus lacustris [CAIZWK]
56558
56472
-
Ser
TGA
[ENA]
¡û
>W2110091445
CAJACU010000002
Cyanobacteriota
Synechococcus lacustris [CAJACU]
56558
56472
-
Ser
TGA
[ENA]
¡û
>W2110091712
CAJAKO010000020
Cyanobacteriota
Synechococcus lacustris [CAJAKO]
56554
56468
-
Ser
TGA
[ENA]
¡û
>W2110092199
CAJAYV010000024
Cyanobacteriota
Synechococcus lacustris [CAJAYV]
56558
56472
-
Ser
TGA
[ENA]
¡û
>W2110092658
CAJBJJ010000005
Cyanobacteriota
Synechococcus lacustris [CAJBJJ]
56558
56472
-
Ser
TGA
[ENA]
¡û
>W2110092875
CAJBXU010000004
Cyanobacteriota
Synechococcus lacustris [CAJBXU]
56538
56452
-
Ser
TGA
[ENA]
¡û
>C211072890
CP047948
Cyanobacteriota
Synechococcus sp. A15-127 [CP047948]
1378484
1378568
+
Ser
TGA
-
¡û
>C211132882
CP060396
Cyanobacteriota
Synechococcus sp. CBW1006 [CP060396]
3767414
3767330
-
Ser
TGA
-
¡û
>C211132977
CP060398
Cyanobacteriota
Synechococcus sp. CBW1002 [CP060398]
3769124
3769040
-
Ser
TGA
-
¡û
>C241043016
CP035632
Cyanobacteriota
Synechococcus sp. RSCCF101 [CP035632]
1198662
1198747
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK