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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509389 (88 seq.)
>W1711129037
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
113570
113645
+
Trp
CCA
[ENA]
¡û
>W1711302710
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
2268638
2268563
-
Trp
CCA
[ENA]
¡û
>W1711425100
MIEQ01000022
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
74456
74531
+
Trp
CCA
[ENA]
¡û
>C171117525
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
783334
783259
-
Trp
CCA
-
¡û
>C171117989
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2516166
2516241
+
Trp
CCA
-
¡û
>W131044809
AMQY01000010
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
162011
162086
+
Trp
CCA
[ENA]
¡û
>W131174804
ARIT01000013
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
236573
236498
-
Trp
CCA
[ENA]
¡û
>W131175717
ARJM01000022
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
15785
15710
-
Trp
CCA
[ENA]
¡û
>W131179582
ARMN01000008
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
189
264
+
Trp
CCA
[ENA]
¡û
>W131222106
AUAZ01000051
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
173
248
+
Trp
CCA
[ENA]
¡û
>w015110
AAOW01000039
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
15164
15087
-
Trp
CCA
[ENA]
¡û
>WENV180293584
OBIY01000137
[OBIY] beach sand metagenome; beach sand
16159
16234
+
Trp
CCA
[ENA]
¡û
>WENV180309572
OBJS01008542
[OBJS] beach sand metagenome; beach sand
1281
1206
-
Trp
CCA
[ENA]
¡û
>WENV180582063
OCML01075094
[OCML] metagenome; diffuse fluid
127
52
-
Trp
CCA
[ENA]
¡û
>WENV182541171
OJAS01000733
[OJAS] seawater metagenome; Sea water
1027
1102
+
Trp
CCA
[ENA]
¡û
>WENV182589142
OJHZ01000011
[OJHZ] seawater metagenome; Sea water
4920
4995
+
Trp
CCA
[ENA]
¡û
>WENV183057548
OLHL01007002
[OLHL] seawater metagenome; Sea water
129
204
+
Trp
CCA
[ENA]
¡û
>WENV183718299
PDWJ01003278
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
211
286
+
Trp
CCA
[ENA]
¡û
>WENV170014343
AYRE01003834
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
442
517
+
Trp
CCA
[ENA]
¡û
>WENV170704597
LLEL01005675
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
154
79
-
Trp
CCA
[ENA]
¡û
>W141557743
JHVJ01000039
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
1111
1186
+
Trp
CCA
[ENA]
¡û
>W141712348
JMQN01000056
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
15508
15433
-
Trp
CCA
[ENA]
¡û
>W1910183881
BJOC01000033
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
2618
2693
+
Trp
CCA
[ENA]
¡û
>W1910377571
FUKM01000046
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
201601
201526
-
Trp
CCA
[ENA]
¡û
>W1911203576
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
298270
298195
-
Trp
CCA
[ENA]
¡û
>W1911539880
ONZI01000003
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
12488
12563
+
Trp
CCA
[ENA]
¡û
>W1810400707
PYGI01000008
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
69572
69497
-
Trp
CCA
[ENA]
¡û
>W1810673461
QJUB01000030
Gammaproteobacteria
Halomonas elongata MH25661 [QJUB]
35788
35713
-
Trp
CCA
[ENA]
¡û
>W1810779459
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
193531
193456
-
Trp
CCA
[ENA]
¡û
>W1810786998
QRDJ01000008
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
12316
12391
+
Trp
CCA
[ENA]
¡û
>W2010097496
BJOC01000033
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
2618
2693
+
Trp
CCA
[ENA]
¡û
>W2010402408
FUKM01000046
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
201601
201526
-
Trp
CCA
[ENA]
¡û
>W2011049089
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
298270
298195
-
Trp
CCA
[ENA]
¡û
>W2011170155
ONZI01000003
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
12488
12563
+
Trp
CCA
[ENA]
¡û
>W2011354158
RAPM01000002
Gammaproteobacteria
Kushneria marisflavi DSM 15357 [RAPM]
12494
12569
+
Trp
CCA
[ENA]
¡û
>W2011482918
RQXV01000012
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
84451
84376
-
Trp
CCA
[ENA]
¡û
>W2011482979
RQXW01000014
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
24769
24844
+
Trp
CCA
[ENA]
¡û
>W2011522310
SACQ01000007
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
148837
148912
+
Trp
CCA
[ENA]
¡û
>W2011670903
SPLL01000012
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
15339
15264
-
Trp
CCA
[ENA]
¡û
>W2012037828
VIFN01000005
Gammaproteobacteria
Halomonas sp. B1.N12 [VIFN]
216474
216399
-
Trp
CCA
[ENA]
¡û
>W2012141700
VTPU01000011
Gammaproteobacteria
Halomonas eurihalina MS1 [VTPU]
129710
129635
-
Trp
CCA
[ENA]
¡û
>W2110026514
BMIJ01000014
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
15206
15131
-
Trp
CCA
[ENA]
¡û
>W2110030768
BMLT01000025
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
15361
15286
-
Trp
CCA
[ENA]
¡û
>W2110033989
BMOH01000009
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
84435
84360
-
Trp
CCA
[ENA]
¡û
>W2110188281
JABUYX010000003
Gammaproteobacteria
Halomonas sp. FME63 [JABUYX]
204512
204437
-
Trp
CCA
[ENA]
¡û
>W2110188352
JABUYY010000007
Gammaproteobacteria
Halomonas sp. FME64 [JABUYY]
196762
196687
-
Trp
CCA
[ENA]
¡û
>W2110188445
JABUZA010000009
Gammaproteobacteria
Halomonas sp. FME66 [JABUZA]
89255
89330
+
Trp
CCA
[ENA]
¡û
>W2110188560
JABUZC010000017
Gammaproteobacteria
Halomonas sp. 1M45 [JABUZC]
100594
100519
-
Trp
CCA
[ENA]
¡û
>W2110304973
JADDHN010000007
Gammaproteobacteria
Halomonas elongata BLLS135 [JADDHN]
184714
184639
-
Trp
CCA
[ENA]
¡û
>W2110313389
JADEYS010000005
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
122570
122645
+
Trp
CCA
[ENA]
¡û
>W2110428127
JAEMGS010000007
Gammaproteobacteria
Motiliproteus sp. SC1-56 [JAEMGS]
36434
36509
+
Trp
CCA
[ENA]
¡û
>W2110445203
JAERQK010000006
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
144292
144217
-
Trp
CCA
[ENA]
¡û
>W2110496099
JAFFZO010000055
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
16118
16043
-
Trp
CCA
[ENA]
¡û
>W2110496143
JAFFZP010000017
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
54999
55074
+
Trp
CCA
[ENA]
¡û
>W2110500835
JAFIDL010000016
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
15363
15288
-
Trp
CCA
[ENA]
¡û
>W2110612327
JAHKQE010000041
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
155682
155757
+
Trp
CCA
[ENA]
¡û
>W2110640710
JAHREP010000046
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
153
228
+
Trp
CCA
[ENA]
¡û
>W2110640805
JAHRFY010000006
Gammaproteobacteria
Halomonadaceae bacterium MT13 [JAHRFY]
39088
39163
+
Trp
CCA
[ENA]
¡û
>W2110640869
JAHRFZ010000009
Gammaproteobacteria
Halomonadaceae bacterium MT32 [JAHRFZ]
39088
39163
+
Trp
CCA
[ENA]
¡û
>C211000102
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3646609
3646534
-
Trp
CCA
-
¡û
>C211361174
CP077941
Gammaproteobacteria
Halomonadaceae bacterium MT13 [CP077941]
85958
86033
+
Trp
CCA
-
¡û
>C231011255
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4782763
4782688
-
Trp
CCA
-
¡û
>C231011333
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4793756
4793681
-
Trp
CCA
-
¡û
>C231011411
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
4576622
4576547
-
Trp
CCA
-
¡û
>C231011483
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4520676
4520601
-
Trp
CCA
-
¡û
>C231019776
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3599259
3599184
-
Trp
CCA
-
¡û
>C231019820
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
229967
230042
+
Trp
CCA
-
¡û
>C231131057
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3877960
3878035
+
Trp
CCA
-
¡û
>C231238882
CP087224
Gammaproteobacteria
Halomonas elongata DL7 [CP087224]
267228
267303
+
Trp
CCA
-
¡û
>W2110766552
RRZB01000001
Gammaproteobacteria
Halomonas sp. FME20 [RRZB]
89027
89102
+
Trp
CCA
[ENA]
¡û
>W2110766627
RRZC01000006
Gammaproteobacteria
Halomonas sp. FME16 [RRZC]
83808
83883
+
Trp
CCA
[ENA]
¡û
>W2110766674
RRZD01000006
Gammaproteobacteria
Halomonas sp. FME1 [RRZD]
204087
204012
-
Trp
CCA
[ENA]
¡û
>C231507286
CP107007
Gammaproteobacteria
Halomonas sp. GD1P12 [CP107007]
167963
168038
+
Trp
CCA
-
¡û
>C241010980
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1456582
1456507
-
Trp
CCA
-
¡û
>C241321512
CP134865
Gammaproteobacteria
Halomonas sp. PAMB 3232 [CP134865]
3499351
3499276
-
Trp
CCA
-
¡û
>C241321573
CP134866
Gammaproteobacteria
Halomonas sp. PAMB 3264 [CP134866]
3534468
3534393
-
Trp
CCA
-
¡û
>C241350707
CP139472
Gammaproteobacteria
Halomonas elongata DSM 2581 ATCC 33173 [CP139472]
3937462
3937537
+
Trp
CCA
-
¡û
>C241372218
CP142770
Gammaproteobacteria
Halomonas elongata SEK2 [CP142770]
232189
232264
+
Trp
CCA
-
¡û
>C11110071
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
267455
267530
+
Trp
CCA
[Ensembl]
¡û
>W11170438
AFPL01000058
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
15304
15229
-
Trp
CCA
[ENA]
¡û
>C161091182
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4899631
4899556
-
Trp
CCA
[Ensembl]
¡û
>W1610062701
BCNS01000100
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
102079
102004
-
Trp
CCA
[ENA]
¡û
>W1610940110
LUTS01000003
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
113570
113645
+
Trp
CCA
[ENA]
¡û
>W1611053035
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
2268638
2268563
-
Trp
CCA
[ENA]
¡û
>W1710060177
BCNS01000100
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
102079
102004
-
Trp
CCA
[ENA]
¡û
>W1710551448
FOGB01000027
Gammaproteobacteria
Amphritea atlantica [FOGB]
15476
15401
-
Trp
CCA
[ENA]
¡û
>W1710558492
FOLY01000002
Gammaproteobacteria
Kushneria avicenniae [FOLY]
12419
12494
+
Trp
CCA
[ENA]
¡û
>W1710596407
FTMN01000009
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
130338
130263
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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