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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51060 (115 seq.)
>W1711124661
LUKI01000079
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
3263
3176
-
Ser
GGA
[ENA]
¡û
>W1711678531
MRUG01000033
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
272621
272534
-
Ser
GGA
[ENA]
¡û
>W1711767396
MUZU01000007
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
43296
43209
-
Ser
GGA
[ENA]
¡û
>W1711947461
NBOC01000012
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
109536
109623
+
Ser
GGA
[ENA]
¡û
>W1711947603
NBOE01000019
Gammaproteobacteria
Colwellia polaris [NBOE]
30037
30124
+
Ser
GGA
[ENA]
¡û
>W1711947648
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
849404
849491
+
Ser
GGA
[ENA]
¡û
>W1711947697
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
1046
959
-
Ser
GGA
[ENA]
¡û
>C171034467
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3226127
3226214
+
Ser
GGA
-
¡û
>C171108367
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
3251045
3251132
+
Ser
GGA
-
¡û
>C020874
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
1511252
1511339
+
Ser
GGA
[Ensembl]
¡û
>WENV180389265
OBPI01105210
[OBPI] marine metagenome; Sterile flask
139
226
+
Ser
GGA
[ENA]
¡û
>WENV180390200
OBPK01049787
[OBPK] marine metagenome; Sterile flask
318
405
+
Ser
GGA
[ENA]
¡û
>WENV180587988
OCOO01134192
[OCOO] marine metagenome; seawater
290
377
+
Ser
GGA
[ENA]
¡û
>WENV181319638
OFKE01004982
[OFKE] marine metagenome; seawater
69
156
+
Ser
GGA
[ENA]
¡û
>WENV182540220
OJAF01000299
[OJAF] seawater metagenome; Sea water
4347
4434
+
Ser
GGA
[ENA]
¡û
>WENV182542051
OJAV01000857
[OJAV] seawater metagenome; Sea water
9655
9742
+
Ser
GGA
[ENA]
¡û
>WENV182542144
OJAV01004980
[OJAV] seawater metagenome; Sea water
1050
1137
+
Ser
GGA
[ENA]
¡û
>WENV182543674
OJBC01000186
[OJBC] seawater metagenome; Sea water
29170
29257
+
Ser
GGA
[ENA]
¡û
>WENV182544629
OJBI01000307
[OJBI] seawater metagenome; Sea water
3463
3376
-
Ser
GGA
[ENA]
¡û
>WENV182544768
OJBJ01001748
[OJBJ] seawater metagenome; Sea water
635
548
-
Ser
GGA
[ENA]
¡û
>WENV182545098
OJBM01000074
[OJBM] seawater metagenome; Sea water
56749
56836
+
Ser
GGA
[ENA]
¡û
>WENV182545101
OJBM01000091
[OJBM] seawater metagenome; Sea water
47931
48018
+
Ser
GGA
[ENA]
¡û
>WENV182545181
OJBM01004047
[OJBM] seawater metagenome; Sea water
12
99
+
Ser
GGA
[ENA]
¡û
>WENV182546418
OJBO01024018
[OJBO] seawater metagenome; Sea water
89
176
+
Ser
GGA
[ENA]
¡û
>WENV182549672
OJBY01006932
[OJBY] seawater metagenome; Sea water
466
379
-
Ser
GGA
[ENA]
¡û
>WENV182550159
OJBZ01007022
[OJBZ] seawater metagenome; Sea water
914
827
-
Ser
GGA
[ENA]
¡û
>WENV182552475
OJCK01000306
[OJCK] seawater metagenome; Sea water
683
596
-
Ser
GGA
[ENA]
¡û
>WENV182554725
OJCW01003608
[OJCW] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¡û
>WENV182556887
OJDH01000827
[OJDH] seawater metagenome; Sea water
494
407
-
Ser
GGA
[ENA]
¡û
>WENV182557379
OJDI01017322
[OJDI] seawater metagenome; Sea water
141
228
+
Ser
GGA
[ENA]
¡û
>WENV182558113
OJDL01005471
[OJDL] seawater metagenome; Sea water
611
524
-
Ser
GGA
[ENA]
¡û
>WENV182559210
OJDO01004027
[OJDO] seawater metagenome; Sea water
579
492
-
Ser
GGA
[ENA]
¡û
>WENV182559747
OJDQ01002657
[OJDQ] seawater metagenome; Sea water
1172
1259
+
Ser
GGA
[ENA]
¡û
>WENV182560010
OJDR01000167
[OJDR] seawater metagenome; Sea water
18514
18601
+
Ser
GGA
[ENA]
¡û
>WENV182560029
OJDR01000385
[OJDR] seawater metagenome; Sea water
1681
1768
+
Ser
GGA
[ENA]
¡û
>WENV182562489
OJDZ01004398
[OJDZ] seawater metagenome; Sea water
1559
1646
+
Ser
GGA
[ENA]
¡û
>WENV182562499
OJDZ01005102
[OJDZ] seawater metagenome; Sea water
572
485
-
Ser
GGA
[ENA]
¡û
>WENV182563761
OJED01000006
[OJED] seawater metagenome; Sea water
151454
151367
-
Ser
GGA
[ENA]
¡û
>WENV182566256
OJEJ01003875
[OJEJ] seawater metagenome; Sea water
781
694
-
Ser
GGA
[ENA]
¡û
>WENV182567211
OJEN01015198
[OJEN] seawater metagenome; Sea water
143
230
+
Ser
GGA
[ENA]
¡û
>WENV182567473
OJEO01001750
[OJEO] seawater metagenome; Sea water
4834
4921
+
Ser
GGA
[ENA]
¡û
>WENV182567985
OJEP01007432
[OJEP] seawater metagenome; Sea water
1279
1366
+
Ser
GGA
[ENA]
¡û
>WENV182568321
OJET01001145
[OJET] seawater metagenome; Sea water
511
424
-
Ser
GGA
[ENA]
¡û
>WENV182568720
OJEW01001506
[OJEW] seawater metagenome; Sea water
1628
1715
+
Ser
GGA
[ENA]
¡û
>WENV182568929
OJEX01003907
[OJEX] seawater metagenome; Sea water
1148
1061
-
Ser
GGA
[ENA]
¡û
>WENV182575424
OJFU01017798
[OJFU] seawater metagenome; Sea water
588
501
-
Ser
GGA
[ENA]
¡û
>WENV182575651
OJFV01001476
[OJFV] seawater metagenome; Sea water
1508
1595
+
Ser
GGA
[ENA]
¡û
>WENV182576298
OJFX01009049
[OJFX] seawater metagenome; Sea water
1716
1803
+
Ser
GGA
[ENA]
¡û
>WENV182579690
OJGT01000007
[OJGT] seawater metagenome; Sea water
262454
262541
+
Ser
GGA
[ENA]
¡û
>WENV182581476
OJGX01008466
[OJGX] seawater metagenome; Sea water
1688
1775
+
Ser
GGA
[ENA]
¡û
>WENV182586988
OJHK01026322
[OJHK] seawater metagenome; Sea water
141
228
+
Ser
GGA
[ENA]
¡û
>WENV182588120
OJHO01005133
[OJHO] seawater metagenome; Sea water
1137
1050
-
Ser
GGA
[ENA]
¡û
>WENV182589071
OJHY01018349
[OJHY] seawater metagenome; Sea water
255
342
+
Ser
GGA
[ENA]
¡û
>WENV182590632
OJIJ01000827
[OJIJ] seawater metagenome; Sea water
2798
2885
+
Ser
GGA
[ENA]
¡û
>WENV182592644
OJIR01006537
[OJIR] seawater metagenome; Sea water
781
694
-
Ser
GGA
[ENA]
¡û
>WENV183053732
OLGQ01001365
[OLGQ] seawater metagenome; Sea water
655
742
+
Ser
GGA
[ENA]
¡û
>WENV183055373
OLGX01011482
[OLGX] seawater metagenome; Sea water
63
150
+
Ser
GGA
[ENA]
¡û
>WENV183055540
OLHD01000865
[OLHD] seawater metagenome; Sea water
471
384
-
Ser
GGA
[ENA]
¡û
>WENV183055722
OLHF01000221
[OLHF] seawater metagenome; Sea water
8122
8209
+
Ser
GGA
[ENA]
¡û
>WENV183056541
OLHJ01000677
[OLHJ] seawater metagenome; Sea water
491
404
-
Ser
GGA
[ENA]
¡û
>WENV183057772
OLHM01003827
[OLHM] seawater metagenome; Sea water
1527
1614
+
Ser
GGA
[ENA]
¡û
>WENV183058283
OLHP01000822
[OLHP] seawater metagenome; Sea water
150
63
-
Ser
GGA
[ENA]
¡û
>WENV183058348
OLHQ01000391
[OLHQ] seawater metagenome; Sea water
1362
1275
-
Ser
GGA
[ENA]
¡û
>WENV183059789
OLHV01004464
[OLHV] seawater metagenome; Sea water
952
1039
+
Ser
GGA
[ENA]
¡û
>WENV183060066
OLHW01007731
[OLHW] seawater metagenome; Sea water
468
555
+
Ser
GGA
[ENA]
¡û
>WENV183064780
OLII01000586
[OLII] seawater metagenome; Sea water
11587
11674
+
Ser
GGA
[ENA]
¡û
>WENV183064899
OLII01002660
[OLII] seawater metagenome; Sea water
1056
969
-
Ser
GGA
[ENA]
¡û
>WENV183064982
OLII01006878
[OLII] seawater metagenome; Sea water
1092
1005
-
Ser
GGA
[ENA]
¡û
>WENV183522029
OMOM01000001
[OMOM] seawater metagenome; Sea water
504271
504184
-
Ser
GGA
[ENA]
¡û
>WENV170015672
AZII01002428
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
565
652
+
Ser
GGA
[ENA]
¡û
>WENV170015693
AZII01003370
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
485
398
-
Ser
GGA
[ENA]
¡û
>WENV170538918
CEWR01132838
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1435
1348
-
Ser
GGA
[ENA]
¡û
>WENV170780062
MAAA01011242
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
416
503
+
Ser
GGA
[ENA]
¡û
>WENV170780262
MAAA01025571
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
19027
18940
-
Ser
GGA
[ENA]
¡û
>WENV170780263
MAAA01025586
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
13954
13867
-
Ser
GGA
[ENA]
¡û
>WENV170780265
MAAA01025649
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
6656
6743
+
Ser
GGA
[ENA]
¡û
>WENV170780286
MAAA01027307
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1449
1536
+
Ser
GGA
[ENA]
¡û
>WENV170780477
MAAB01001493
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
20118
20031
-
Ser
GGA
[ENA]
¡û
>WENV170780554
MAAB01005484
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
30
117
+
Ser
GGA
[ENA]
¡û
>WENV170781719
MAAB01042121
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
17105
17018
-
Ser
GGA
[ENA]
¡û
>WENV170781740
MAAB01042856
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
10039
9952
-
Ser
GGA
[ENA]
¡û
>WENV170781762
MAAB01043479
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
90
3
-
Ser
GGA
[ENA]
¡û
>WENV170782169
MAAC01009538
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
135669
135582
-
Ser
GGA
[ENA]
¡û
>WENV170782273
MAAC01009624
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
57386
57299
-
Ser
GGA
[ENA]
¡û
>WENV170782430
MAAC01009874
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3301
3214
-
Ser
GGA
[ENA]
¡û
>WENV170783799
MAAC01018868
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8383
8470
+
Ser
GGA
[ENA]
¡û
>C181169951
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3093942
3093855
-
Ser
GGA
-
¡û
>W09100584
AABI03000016
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
2331
2244
-
Ser
GGA
[ENA]
¡û
>C191128334
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1308480
1308567
+
Ser
GGA
-
¡û
>C191130492
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1070618
1070531
-
Ser
GGA
-
¡û
>W1911770247
QXIO01000011
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
64899
64812
-
Ser
GGA
[ENA]
¡û
>W2010168633
CABFPG010000012
Gammaproteobacteria
Teredinibacter sp. ISS155 [CABFPG]
47362
47449
+
Ser
GGA
[ENA]
¡û
>W2010689393
JACGVA010000042
Gammaproteobacteria
Colwellia sp. MB3u-8 [JACGVA]
35128
35215
+
Ser
GGA
[ENA]
¡û
>W2010689461
JACGVB010000074
Gammaproteobacteria
Colwellia sp. MB3u-70 [JACGVB]
35141
35228
+
Ser
GGA
[ENA]
¡û
>W2010689529
JACGVC010000043
Gammaproteobacteria
Colwellia sp. MB3u-45 [JACGVC]
761
674
-
Ser
GGA
[ENA]
¡û
>W2010689643
JACGVD010000078
Gammaproteobacteria
Colwellia sp. MB3u-43 [JACGVD]
122812
122899
+
Ser
GGA
[ENA]
¡û
>W2010689698
JACGVE010000081
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
617
530
-
Ser
GGA
[ENA]
¡û
>W2010689763
JACGVF010000093
Gammaproteobacteria
Colwellia sp. MB02u-9 [JACGVF]
760
673
-
Ser
GGA
[ENA]
¡û
>W2010689846
JACGVG010000035
Gammaproteobacteria
Colwellia sp. MB02u-6 [JACGVG]
534862
534949
+
Ser
GGA
[ENA]
¡û
>W2010689895
JACGVH010000044
Gammaproteobacteria
Colwellia sp. MB02u-19 [JACGVH]
761
674
-
Ser
GGA
[ENA]
¡û
>W2010689962
JACGVI010000044
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
761
674
-
Ser
GGA
[ENA]
¡û
>W2010690049
JACGVJ010000046
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
761
674
-
Ser
GGA
[ENA]
¡û
>W2010690145
JACGVK010000114
Gammaproteobacteria
Colwellia sp. MB02u-10 [JACGVK]
57904
57991
+
Ser
GGA
[ENA]
¡û
>W2010690204
JACGVL010000053
Gammaproteobacteria
Colwellia sp. MB02u-1 [JACGVL]
122834
122921
+
Ser
GGA
[ENA]
¡û
>W2010691546
JACGWF010000033
Gammaproteobacteria
Colwellia sp. 6M3 [JACGWF]
379
292
-
Ser
GGA
[ENA]
¡û
>W2010901648
MRUH01000045
Gammaproteobacteria
Teredinibacter waterburyi Bs02 [MRUH]
80610
80697
+
Ser
GGA
[ENA]
¡û
>W2011327586
QXIO01000011
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
64899
64812
-
Ser
GGA
[ENA]
¡û
>W2110611616
JAHKPP010000006
Gammaproteobacteria
Saccharophagus degradans E3M17 [JAHKPP]
156388
156301
-
Ser
GGA
[ENA]
¡û
>C211128770
CP060084
Gammaproteobacteria
Teredinibacter haidensis Bs08 [CP060084]
2524948
2524861
-
Ser
GGA
-
¡û
>C211129085
CP060092
Gammaproteobacteria
Teredinibacter purpureus Bs12 [CP060092]
4157201
4157114
-
Ser
GGA
-
¡û
>C241249920
CP123764
Gammaproteobacteria
Saccharophagus degradans FZY0027 [CP123764]
3791297
3791210
-
Ser
GGA
-
¡û
>W1510865164
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4162692
4162605
-
Ser
GGA
[ENA]
¡û
>W11137016
AEGL01000345
Gammaproteobacteria
gamma proteobacterium IMCC2047 [AEGL]
858
771
-
Ser
GGA
[ENA]
¡û
>W1610935633
LUKI01000079
Gammaproteobacteria
Gammaproteobacteria bacterium F7 [LUKI]
3263
3176
-
Ser
GGA
[ENA]
¡û
>W1710545267
FOBI01000016
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
833
746
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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