This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51082 (87 seq.)
>WENV180698096
ODDE01033215
[ODDE] human metagenome; G_DNA_Supragingival plaque
526
441
-
Ser
TGA
[ENA]
¡û
>WENV180729285
ODGU01320187
[ODGU] human metagenome; G_DNA_Supragingival plaque
109
194
+
Ser
TGA
[ENA]
¡û
>WENV180735112
ODGZ01067736
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1
86
+
Ser
TGA
[ENA]
¡û
>WENV180735902
ODHB01001627
[ODHB] human metagenome; G_DNA_Supragingival plaque
86
1
-
Ser
TGA
[ENA]
¡û
>WENV180749876
ODHS01000063
[ODHS] human metagenome; G_DNA_Supragingival plaque
16757
16670
-
Ser
TGA
[ENA]
¡û
>WENV180754824
ODHU01001247
[ODHU] human metagenome; G_DNA_Supragingival plaque
502
589
+
Ser
TGA
[ENA]
¡û
>WENV180777162
ODIL01000209
[ODIL] human metagenome; G_DNA_Supragingival plaque
5056
5143
+
Ser
TGA
[ENA]
¡û
>WENV180778680
ODIM01038493
[ODIM] human metagenome; G_DNA_Supragingival plaque
154
69
-
Ser
TGA
[ENA]
¡û
>WENV180781924
ODIP01008517
[ODIP] human metagenome; G_DNA_Supragingival plaque
375
290
-
Ser
TGA
[ENA]
¡û
>WENV180788559
ODIS01075805
[ODIS] human metagenome; G_DNA_Supragingival plaque
147
232
+
Ser
TGA
[ENA]
¡û
>WENV180797253
ODJB01041410
[ODJB] human metagenome; G_DNA_Supragingival plaque
159
244
+
Ser
TGA
[ENA]
¡û
>WENV180801157
ODJD01010266
[ODJD] human metagenome; G_DNA_Supragingival plaque
148
233
+
Ser
TGA
[ENA]
¡û
>WENV180805228
ODJG01106840
[ODJG] human metagenome; G_DNA_Supragingival plaque
265
350
+
Ser
TGA
[ENA]
¡û
>WENV180813722
ODJO01001929
[ODJO] human metagenome; G_DNA_Supragingival plaque
6234
6321
+
Ser
TGA
[ENA]
¡û
>WENV180823339
ODJW01019441
[ODJW] human metagenome; G_DNA_Supragingival plaque
747
660
-
Ser
TGA
[ENA]
¡û
>WENV180824516
ODJX01011713
[ODJX] human metagenome; G_DNA_Supragingival plaque
748
833
+
Ser
TGA
[ENA]
¡û
>WENV180833323
ODKC01030389
[ODKC] human metagenome; G_DNA_Supragingival plaque
755
840
+
Ser
TGA
[ENA]
¡û
>WENV180833919
ODKD01000972
[ODKD] human metagenome; G_DNA_Supragingival plaque
6907
6992
+
Ser
TGA
[ENA]
¡û
>WENV180836175
ODKE01054780
[ODKE] human metagenome; G_DNA_Supragingival plaque
391
476
+
Ser
TGA
[ENA]
¡û
>WENV180844404
ODKN01105630
[ODKN] human metagenome; G_DNA_Supragingival plaque
301
216
-
Ser
TGA
[ENA]
¡û
>WENV180847189
ODKT01050465
[ODKT] human metagenome; G_DNA_Supragingival plaque
269
184
-
Ser
TGA
[ENA]
¡û
>WENV180859613
ODLD01001916
[ODLD] human metagenome; G_DNA_Supragingival plaque
9002
8917
-
Ser
TGA
[ENA]
¡û
>WENV180889556
ODMN01061755
[ODMN] human metagenome; G_DNA_Supragingival plaque
493
578
+
Ser
TGA
[ENA]
¡û
>WENV180922521
ODTJ01005259
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3355
3270
-
Ser
TGA
[ENA]
¡û
>WENV180924760
ODTK01014885
[ODTK] human metagenome; G_DNA_Supragingival plaque
295
210
-
Ser
TGA
[ENA]
¡û
>WENV180927770
ODTM01003521
[ODTM] human metagenome; G_DNA_Supragingival plaque
1
88
+
Ser
TGA
[ENA]
¡û
>WENV180928369
ODTM01037924
[ODTM] human metagenome; G_DNA_Supragingival plaque
677
762
+
Ser
TGA
[ENA]
¡û
>WENV180928536
ODTM01077257
[ODTM] human metagenome; G_DNA_Supragingival plaque
143
58
-
Ser
TGA
[ENA]
¡û
>WENV180933316
ODTR01000025
[ODTR] human metagenome; G_DNA_Supragingival plaque
52550
52463
-
Ser
TGA
[ENA]
¡û
>WENV180934406
ODTS01000022
[ODTS] human metagenome; G_DNA_Subgingival plaque
56650
56737
+
Ser
TGA
[ENA]
¡û
>WENV180938386
ODTX01001732
[ODTX] human metagenome; G_DNA_Supragingival plaque
6731
6818
+
Ser
TGA
[ENA]
¡û
>WENV180938976
ODTX01011226
[ODTX] human metagenome; G_DNA_Supragingival plaque
2225
2140
-
Ser
TGA
[ENA]
¡û
>WENV180939377
ODTX01031126
[ODTX] human metagenome; G_DNA_Supragingival plaque
832
747
-
Ser
TGA
[ENA]
¡û
>WENV180944897
ODUC01045628
[ODUC] human metagenome; G_DNA_Supragingival plaque
1137
1222
+
Ser
TGA
[ENA]
¡û
>WENV180958290
ODUL01002190
[ODUL] human metagenome; G_DNA_Supragingival plaque
508
595
+
Ser
TGA
[ENA]
¡û
>WENV180964008
ODUO01000101
[ODUO] human metagenome; G_DNA_Supragingival plaque
37106
37193
+
Ser
TGA
[ENA]
¡û
>WENV180973335
ODUW01003627
[ODUW] human metagenome; G_DNA_Supragingival plaque
2110
2195
+
Ser
TGA
[ENA]
¡û
>WENV180974016
ODUW01042544
[ODUW] human metagenome; G_DNA_Supragingival plaque
511
596
+
Ser
TGA
[ENA]
¡û
>WENV180980671
ODVE01001026
[ODVE] human metagenome; G_DNA_Supragingival plaque
2362
2447
+
Ser
TGA
[ENA]
¡û
>WENV180983148
ODVF01004259
[ODVF] human metagenome; G_DNA_Supragingival plaque
1969
1884
-
Ser
TGA
[ENA]
¡û
>WENV180999774
ODVT01064079
[ODVT] human metagenome; G_DNA_Buccal mucosa
386
471
+
Ser
TGA
[ENA]
¡û
>WENV181002687
ODVX01001214
[ODVX] human metagenome; G_DNA_Supragingival plaque
14979
14894
-
Ser
TGA
[ENA]
¡û
>WENV181008020
ODWE01001533
[ODWE] human metagenome; G_DNA_Supragingival plaque
7666
7579
-
Ser
TGA
[ENA]
¡û
>WENV181009036
ODWE01025395
[ODWE] human metagenome; G_DNA_Supragingival plaque
1626
1541
-
Ser
TGA
[ENA]
¡û
>WENV181009120
ODWE01030897
[ODWE] human metagenome; G_DNA_Supragingival plaque
847
762
-
Ser
TGA
[ENA]
¡û
>WENV181020008
ODWU01034860
[ODWU] human metagenome; G_DNA_Supragingival plaque
246
331
+
Ser
TGA
[ENA]
¡û
>WENV181030097
ODXF01032858
[ODXF] human metagenome; G_DNA_Supragingival plaque
474
559
+
Ser
TGA
[ENA]
¡û
>WENV181049630
ODYD01000983
[ODYD] human metagenome; G_DNA_Supragingival plaque
6914
7001
+
Ser
TGA
[ENA]
¡û
>WENV181050278
ODYD01011403
[ODYD] human metagenome; G_DNA_Supragingival plaque
2236
2151
-
Ser
TGA
[ENA]
¡û
>WENV181063823
ODYP01003952
[ODYP] human metagenome; G_DNA_Supragingival plaque
6316
6231
-
Ser
TGA
[ENA]
¡û
>WENV181067288
ODZI01011545
[ODZI] human metagenome; G_DNA_Supragingival plaque
487
572
+
Ser
TGA
[ENA]
¡û
>WENV181070650
OEAE01004760
[OEAE] human metagenome; G_DNA_Supragingival plaque
1596
1681
+
Ser
TGA
[ENA]
¡û
>WENV181076465
OEAP01005727
[OEAP] human metagenome; G_DNA_Supragingival plaque
164
251
+
Ser
TGA
[ENA]
¡û
>WENV181079060
OEAS01001665
[OEAS] human metagenome; G_DNA_Supragingival plaque
5846
5759
-
Ser
TGA
[ENA]
¡û
>WENV181081195
OEAS01145540
[OEAS] human metagenome; G_DNA_Supragingival plaque
511
596
+
Ser
TGA
[ENA]
¡û
>WENV181084077
OEAV01059338
[OEAV] human metagenome; G_DNA_Supragingival plaque
528
613
+
Ser
TGA
[ENA]
¡û
>WENV181084089
OEAV01062502
[OEAV] human metagenome; G_DNA_Supragingival plaque
149
64
-
Ser
TGA
[ENA]
¡û
>WENV181091215
OEBC01017768
[OEBC] human metagenome; G_DNA_Supragingival plaque
1931
1846
-
Ser
TGA
[ENA]
¡û
>WENV181108170
OEEI01113767
[OEEI] human metagenome; G_DNA_Supragingival plaque
28
113
+
Ser
TGA
[ENA]
¡û
>WENV181122009
OEFL01047429
[OEFL] human metagenome; G_DNA_Supragingival plaque
184
99
-
Ser
TGA
[ENA]
¡û
>WENV181146127
OEHQ01001138
[OEHQ] human metagenome; G_DNA_Supragingival plaque
6089
6176
+
Ser
TGA
[ENA]
¡û
>WENV181152904
OEIA01009553
[OEIA] human metagenome; G_DNA_Supragingival plaque
2238
2153
-
Ser
TGA
[ENA]
¡û
>WENV181156300
OEIE01008766
[OEIE] human metagenome; G_DNA_Supragingival plaque
499
584
+
Ser
TGA
[ENA]
¡û
>WENV181160719
OEIK01027594
[OEIK] human metagenome; G_DNA_Supragingival plaque
589
504
-
Ser
TGA
[ENA]
¡û
>WENV181177402
OEJS01001486
[OEJS] human metagenome; G_DNA_Supragingival plaque
5855
5768
-
Ser
TGA
[ENA]
¡û
>WENV181179597
OEJT01009348
[OEJT] human metagenome; G_DNA_Supragingival plaque
613
698
+
Ser
TGA
[ENA]
¡û
>WENV181181947
OEJV01000843
[OEJV] human metagenome; G_DNA_Supragingival plaque
1945
1860
-
Ser
TGA
[ENA]
¡û
>WENV183508605
OMHE01004172
[OMHE] human oral metagenome; human oral
280
365
+
Ser
TGA
[ENA]
¡û
>WENV170011861
APMI01097374
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
972
887
-
Ser
TGA
[ENA]
¡û
>C191173837
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
3183302
3183217
-
Ser
TGA
-
¡û
>C191210852
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
3153892
3153807
-
Ser
TGA
-
¡û
>C191214567
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
3094139
3094054
-
Ser
TGA
-
¡û
>W2010415938
FXTL01000009
Actinomycetota
Propioniciclava tarda DSM 22130 [FXTL]
69805
69890
+
Ser
TGA
[ENA]
¡û
>W2010739021
JACJFW010000011
Actinomycetota
Propioniciclava sp. MC1595 [JACJFW]
86570
86655
+
Ser
TGA
[ENA]
¡û
>W2010739079
JACJFX010000047
Actinomycetota
Propioniciclava sp. MC1683 [JACJFX]
14875
14960
+
Ser
TGA
[ENA]
¡û
>W2011451008
RKKA01000001
Actinomycetota
Pseudopropionibacterium propionicum FDAARGOS_578 [RKKA]
2167273
2167358
+
Ser
TGA
[ENA]
¡û
>W2011548754
SDMQ01000004
Actinomycetota
Brevilactibacter sinopodophylli KCTC 33808 [SDMQ]
111207
111122
-
Ser
TGA
[ENA]
¡û
>W2011548810
SDMR01000009
Actinomycetota
Propioniciclava tarda DSM 22130 [SDMR]
69837
69922
+
Ser
TGA
[ENA]
¡û
>W2011951768
UWTZ01000015
Actinomycetota
Pseudopropionibacterium sp. Marseille-P6184 [UWTZ]
134897
134812
-
Ser
TGA
[ENA]
¡û
>C211019792
AP024463
Actinomycetota
Arachnia rubra SK-1 [AP024463]
3095062
3094975
-
Ser
TGA
-
¡û
>C211296957
CP071870
Actinomycetota
Brevilactibacter sp. MC1595 [CP071870]
373547
373632
+
Ser
TGA
-
¡û
>C211307327
CP072384
Actinomycetota
Arachnia rubra DSMZ 100122 [CP072384]
3114482
3114395
-
Ser
TGA
-
¡û
>C211307351
CP072385
Actinomycetota
Arachnia propionica F0714 [CP072385]
275322
275407
+
Ser
TGA
-
¡û
>C211307417
CP072386
Actinomycetota
Arachnia propionica F0231 [CP072386]
3122544
3122459
-
Ser
TGA
-
¡û
>C121002944
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
3195631
3195546
-
Ser
TGA
[Ensembl]
¡û
>W1610074484
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
149365
149450
+
Ser
TGA
[ENA]
¡û
>W1710071602
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
149365
149450
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK