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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513988 (99 seq.)
>W1711724823
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
33708
33781
+
Gly
GCC
[ENA]
¡û
>W1711724828
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
26697
26624
-
Gly
GCC
[ENA]
¡û
>WENV180098735
MTBK01264263
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
856
930
+
Gly
GCC
[ENA]
¡û
>WENV180115977
OAPT01085082
[OAPT] marine metagenome; seawater
12
87
+
Gly
GCC
[ENA]
¡û
>WENV180309201
OBJR01675477
[OBJR] soil metagenome; soil
173
100
-
Gly
GCC
[ENA]
¡û
>WENV180378711
OBOO01110433
[OBOO] marine metagenome; ENVO 00002150
333
258
-
Gly
GCC
[ENA]
¡û
>WENV170194859
CEPJ01074581
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
195
120
-
Gly
GCC
[ENA]
¡û
>WENV170205643
CEPT01109635
[CEPT] marine metagenome genome assembly TARA_039_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1947
1872
-
Gly
GCC
[ENA]
¡û
>WENV170441071
CEUV01146767
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
520
445
-
Gly
GCC
[ENA]
¡û
>WENV170580265
FUFK010045263
[FUFK] metagenome; unknown
12154
12079
-
Gly
GCC
[ENA]
¡û
>WENV170585283
FUFK010276851
[FUFK] metagenome; unknown
932
857
-
Gly
GCC
[ENA]
¡û
>WENV170587111
FUFK010467974
[FUFK] metagenome; unknown
1826
1901
+
Gly
GCC
[ENA]
¡û
>WENV170803243
MDSW01026965
[MDSW] marine metagenome; seawater
925
1000
+
Gly
GCC
[ENA]
¡û
>WENV170845517
MDTA01025354
[MDTA] marine metagenome; seawater
2215
2140
-
Gly
GCC
[ENA]
¡û
>WENV170864852
MDTB01111384
[MDTB] marine metagenome; seawater
8486
8561
+
Gly
GCC
[ENA]
¡û
>WENV170883823
MDTC01173212
[MDTC] marine metagenome; seawater
3592
3667
+
Gly
GCC
[ENA]
¡û
>WENV170896195
MDTD01091718
[MDTD] marine metagenome; seawater
2701
2776
+
Gly
GCC
[ENA]
¡û
>WENV170908244
MDTE01062333
[MDTE] marine metagenome; seawater
1375
1300
-
Gly
GCC
[ENA]
¡û
>WENV170958613
MKWU01001497
[MKWU] sponge metagenome;
9877
9802
-
Gly
GCC
[ENA]
¡û
>WENV170959123
MKWU01003154
[MKWU] sponge metagenome;
6263
6188
-
Gly
GCC
[ENA]
¡û
>W09109265
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
73176
73249
+
Gly
GCC
[ENA]
¡û
>W09109269
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
55135
55062
-
Gly
GCC
[ENA]
¡û
>W1810535047
QDDJ01000012
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
86233
86160
-
Gly
GCC
[ENA]
¡û
>W1810592365
QFXK01000026
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
124476
124549
+
Gly
GCC
[ENA]
¡û
>W1810697559
QLVD01000019
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
83363
83436
+
Gly
GCC
[ENA]
¡û
>SRA1008501
SRR020490.398594
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
20
95
+
Gly
GCC
[SRA]
>WENV002844
AACY020077841
Marine microbial communities from Global Ocean Sampling (GOS)
1066
1141
+
Gly
GCC
[ENA]
>W2010315748
CACISF010000010
Actinomycetota
Actinobacteria bacterium [CACISF]
7133
7208
+
Gly
GCC
[ENA]
¡û
>W2010494287
JAAKZV010000072
Actinomycetota
Streptomyces sp. A7024 [JAAKZV]
23329
23402
+
Gly
GCC
[ENA]
¡û
>W2010561246
JAASRO010000001
Actinomycetota
Kribbella shirazensis DSM 45490 [JAASRO]
5831605
5831678
+
Gly
GCC
[ENA]
¡û
>W2010561262
JAASRO010000001
Actinomycetota
Kribbella shirazensis DSM 45490 [JAASRO]
5823600
5823527
-
Gly
GCC
[ENA]
¡û
>W2010710503
JACHMY010000001
Actinomycetota
Kribbella italica DSM 28967 [JACHMY]
1990141
1990214
+
Gly
GCC
[ENA]
¡û
>W2010710906
JACHNF010000001
Actinomycetota
Kribbella solani DSM 17294 [JACHNF]
2120151
2120224
+
Gly
GCC
[ENA]
¡û
>W2010710952
JACHNF010000001
Actinomycetota
Kribbella solani DSM 17294 [JACHNF]
2111639
2111566
-
Gly
GCC
[ENA]
¡û
>W2011578502
SGXJ01000003
Actinomycetota
Kribbella sp. VKM Ac-2569 [SGXJ]
1101048
1101121
+
Gly
GCC
[ENA]
¡û
>W2011578505
SGXJ01000003
Actinomycetota
Kribbella sp. VKM Ac-2569 [SGXJ]
1095591
1095518
-
Gly
GCC
[ENA]
¡û
>W2011579872
SHKR01000001
Actinomycetota
Kribbella soli VKM Ac-2540 [SHKR]
65461
65534
+
Gly
GCC
[ENA]
¡û
>W2011579875
SHKR01000001
Actinomycetota
Kribbella soli VKM Ac-2540 [SHKR]
56166
56093
-
Gly
GCC
[ENA]
¡û
>W2011605054
SJJY01000002
Actinomycetota
Kribbella sp. YM55 SK5 [SJJY]
1161581
1161654
+
Gly
GCC
[ENA]
¡û
>W2011605058
SJJY01000002
Actinomycetota
Kribbella sp. YM55 SK5 [SJJY]
1153205
1153132
-
Gly
GCC
[ENA]
¡û
>W2011605141
SJJZ01000007
Actinomycetota
Kribbella soli KCTC 29219 [SJJZ]
67908
67981
+
Gly
GCC
[ENA]
¡û
>W2011605144
SJJZ01000007
Actinomycetota
Kribbella soli KCTC 29219 [SJJZ]
63735
63662
-
Gly
GCC
[ENA]
¡û
>W2011605178
SJKA01000008
Actinomycetota
Kribbella sindirgiensis DSM 27082 [SJKA]
256057
256130
+
Gly
GCC
[ENA]
¡û
>W2011605181
SJKA01000008
Actinomycetota
Kribbella sindirgiensis DSM 27082 [SJKA]
250322
250249
-
Gly
GCC
[ENA]
¡û
>W2011605245
SJKB01000030
Actinomycetota
Kribbella pittospori NRRL B-24813 [SJKB]
48915
48842
-
Gly
GCC
[ENA]
¡û
>W2011605248
SJKB01000031
Actinomycetota
Kribbella pittospori NRRL B-24813 [SJKB]
3063
3136
+
Gly
GCC
[ENA]
¡û
>W2011605274
SJKC01000002
Actinomycetota
Kribbella sp. YM55 [SJKC]
53358
53431
+
Gly
GCC
[ENA]
¡û
>W2011605288
SJKC01000002
Actinomycetota
Kribbella sp. YM55 [SJKC]
49465
49392
-
Gly
GCC
[ENA]
¡û
>W2011619733
SLVF01000010
Actinomycetota
Kribbella sp. VKM Ac-2568 [SLVF]
214294
214221
-
Gly
GCC
[ENA]
¡û
>W2011619736
SLVF01000010
Actinomycetota
Kribbella sp. VKM Ac-2568 [SLVF]
211714
211641
-
Gly
GCC
[ENA]
¡û
>W2011620785
SLVW01000010
Actinomycetota
Kribbella sp. VKM Ac-2500 [SLVW]
66187
66260
+
Gly
GCC
[ENA]
¡û
>W2011620788
SLVW01000010
Actinomycetota
Kribbella sp. VKM Ac-2500 [SLVW]
68500
68573
+
Gly
GCC
[ENA]
¡û
>W2011621873
SLWM01000010
Actinomycetota
Kribbella sp. VKM Ac-2538 [SLWM]
44490
44563
+
Gly
GCC
[ENA]
¡û
>W2011621876
SLWM01000010
Actinomycetota
Kribbella sp. VKM Ac-2538 [SLWM]
46803
46876
+
Gly
GCC
[ENA]
¡û
>W2011621948
SLWN01000016
Actinomycetota
Kribbella sp. VKM Ac-2572 [SLWN]
80993
81066
+
Gly
GCC
[ENA]
¡û
>W2011621951
SLWN01000016
Actinomycetota
Kribbella sp. VKM Ac-2572 [SLWN]
75434
75361
-
Gly
GCC
[ENA]
¡û
>W2011622096
SLWR01000001
Actinomycetota
Kribbella sp. VKM Ac-2541 [SLWR]
402350
402423
+
Gly
GCC
[ENA]
¡û
>W2011622103
SLWR01000001
Actinomycetota
Kribbella sp. VKM Ac-2541 [SLWR]
395712
395639
-
Gly
GCC
[ENA]
¡û
>W2011636359
SMKR01000193
Actinomycetota
Kribbella sp. 16K104 [SMKR]
817
744
-
Gly
GCC
[ENA]
¡û
>W2011636366
SMKR01000285
Actinomycetota
Kribbella sp. 16K104 [SMKR]
4190
4263
+
Gly
GCC
[ENA]
¡û
>W2011648108
SNWQ01000008
Actinomycetota
Kribbella sp. VKM Ac-2527 [SNWQ]
89286
89359
+
Gly
GCC
[ENA]
¡û
>W2011648111
SNWQ01000008
Actinomycetota
Kribbella sp. VKM Ac-2527 [SNWQ]
91636
91709
+
Gly
GCC
[ENA]
¡û
>W2011648238
SNWS01000014
Actinomycetota
Kribbella sp. VKM Ac-2571 [SNWS]
221382
221455
+
Gly
GCC
[ENA]
¡û
>W2011648242
SNWS01000014
Actinomycetota
Kribbella sp. VKM Ac-2571 [SNWS]
215410
215337
-
Gly
GCC
[ENA]
¡û
>W2011656008
SOCE01000002
Actinomycetota
Kribbella sp. VKM Ac-2575 [SOCE]
1579682
1579755
+
Gly
GCC
[ENA]
¡û
>W2011657482
SODF01000001
Actinomycetota
Kribbella sp. VKM Ac-2570 [SODF]
1658964
1659037
+
Gly
GCC
[ENA]
¡û
>W2011657497
SODF01000001
Actinomycetota
Kribbella sp. VKM Ac-2570 [SODF]
1650764
1650691
-
Gly
GCC
[ENA]
¡û
>W2011657914
SODP01000001
Actinomycetota
Kribbella sp. VKM Ac-2573 [SODP]
1656817
1656890
+
Gly
GCC
[ENA]
¡û
>W2011657920
SODP01000001
Actinomycetota
Kribbella sp. VKM Ac-2573 [SODP]
1633926
1633853
-
Gly
GCC
[ENA]
¡û
>W2011658139
SODT01000013
Actinomycetota
Kribbella sp. VKM Ac-2566 [SODT]
315907
315980
+
Gly
GCC
[ENA]
¡û
>W2011658143
SODT01000013
Actinomycetota
Kribbella sp. VKM Ac-2566 [SODT]
309895
309822
-
Gly
GCC
[ENA]
¡û
>W2011658158
SODU01000001
Actinomycetota
Kribbella sp. VKMAc-2574 [SODU]
819768
819841
+
Gly
GCC
[ENA]
¡û
>W2011658173
SODU01000001
Actinomycetota
Kribbella sp. VKMAc-2574 [SODU]
813756
813683
-
Gly
GCC
[ENA]
¡û
>W2011751937
SZPZ01000002
Actinomycetota
Kribbella sp. NEAU-THZ 27 [SZPZ]
1176013
1176086
+
Gly
GCC
[ENA]
¡û
>W2011751941
SZPZ01000002
Actinomycetota
Kribbella sp. NEAU-THZ 27 [SZPZ]
1166535
1166462
-
Gly
GCC
[ENA]
¡û
>W2012017507
VFMM01000003
Actinomycetota
Kribbella jejuensis DSM 17305 [VFMM]
888461
888534
+
Gly
GCC
[ENA]
¡û
>W2012017510
VFMM01000003
Actinomycetota
Kribbella jejuensis DSM 17305 [VFMM]
879223
879150
-
Gly
GCC
[ENA]
¡û
>W2012020607
VFOP01000001
Actinomycetota
Ornithinicoccus hortensis DSM 12335 [VFOP]
2671128
2671055
-
Gly
GCC
[ENA]
¡û
>W2012046864
VIVK01000001
Actinomycetota
Kribbella amoyensis DSM 24683 [VIVK]
5831230
5831303
+
Gly
GCC
[ENA]
¡û
>W2012046867
VIVK01000001
Actinomycetota
Kribbella amoyensis DSM 24683 [VIVK]
5832471
5832544
+
Gly
GCC
[ENA]
¡û
>W2012338040
WIQH01000009
Actinomycetota
Ornithinicoccus hortensis HKI0125 [WIQH]
12757
12830
+
Gly
GCC
[ENA]
¡û
>W2110553113
JAGINT010000001
Actinomycetota
Kribbella aluminosa DSM 18824 [JAGINT]
4400113
4400186
+
Gly
GCC
[ENA]
¡û
>W2110553116
JAGINT010000001
Actinomycetota
Kribbella aluminosa DSM 18824 [JAGINT]
4390131
4390058
-
Gly
GCC
[ENA]
¡û
>C211060602
CP043661
Actinomycetota
Kribbella qitaiheensis SPB151 [CP043661]
1217814
1217887
+
Gly
GCC
-
¡û
>C231413087
CP099489
Actinomycetota
Ornithinimicrobium sp. HY1793 [CP099489]
2103436
2103509
+
Gly
GCC
-
¡û
>C231413134
CP099490
Actinomycetota
Ornithinimicrobium sp. JY.X270 [CP099490]
1594470
1594543
+
Gly
GCC
-
¡û
>C241058245
CP041616
Actinomycetota
Ornithinimicrobium ciconiae H23M54 [CP041616]
2108172
2108245
+
Gly
GCC
-
¡û
>C241201830
CP107881
Actinomycetota
Kribbella sp. NBC_00482 [CP107881]
6472535
6472608
+
Gly
GCC
-
¡û
>C241201839
CP107881
Actinomycetota
Kribbella sp. NBC_00482 [CP107881]
6468816
6468743
-
Gly
GCC
-
¡û
>C241205427
CP107975
Actinomycetota
Kribbella sp. NBC_00359 [CP107975]
7455266
7455339
+
Gly
GCC
-
¡û
>C241205440
CP107975
Actinomycetota
Kribbella sp. NBC_00359 [CP107975]
7437250
7437177
-
Gly
GCC
-
¡û
>C241212638
CP108996
Actinomycetota
Kribbella sp. NBC_00709 [CP108996]
6951039
6951112
+
Gly
GCC
-
¡û
>C241212644
CP108996
Actinomycetota
Kribbella sp. NBC_00709 [CP108996]
6929971
6929898
-
Gly
GCC
-
¡û
>C241216083
CP109437
Actinomycetota
Kribbella sp. NBC_01484 [CP109437]
7807866
7807939
+
Gly
GCC
-
¡û
>C241216088
CP109437
Actinomycetota
Kribbella sp. NBC_01484 [CP109437]
7793538
7793465
-
Gly
GCC
-
¡û
>C10107954
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3596933
3597006
+
Gly
GCC
[Ensembl]
¡û
>C10107976
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3578891
3578818
-
Gly
GCC
[Ensembl]
¡û
>W1511625875
LCZK01000010
Actinomycetota
Actinobacteria bacterium IMCC26207 [LCZK]
717823
717748
-
Gly
GCC
[ENA]
¡û
>WENV047821
AACY022691435
Marine microbial communities from Global Ocean Sampling (GOS)
226
151
-
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK