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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51479 (105 seq.)
>W1710821647
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
25843
25930
+
Ser
TGA
[ENA]
¡û
>W1710821751
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
6490
6403
-
Ser
TGA
[ENA]
¡û
>W1710821791
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
26766
26853
+
Ser
TGA
[ENA]
¡û
>W1710821847
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
25843
25930
+
Ser
TGA
[ENA]
¡û
>W1710821902
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
25809
25896
+
Ser
TGA
[ENA]
¡û
>W1710867457
LMIH01000011
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
151357
151444
+
Ser
TGA
[ENA]
¡û
>W1711259812
LYVO01000009
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
4620
4533
-
Ser
TGA
[ENA]
¡û
>W1711384893
MEDM01000231
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
10176
10089
-
Ser
TGA
[ENA]
¡û
>W1711386841
MEFV01000007
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
130566
130653
+
Ser
TGA
[ENA]
¡û
>W1711394759
MERR01000002
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
200698
200785
+
Ser
TGA
[ENA]
¡û
>W1711394818
MERS01000010
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
261377
261464
+
Ser
TGA
[ENA]
¡û
>W1711394862
MERT01000022
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
261246
261333
+
Ser
TGA
[ENA]
¡û
>W1711504545
MKUR01000010
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
130559
130646
+
Ser
TGA
[ENA]
¡û
>W1712049921
NFUT01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
341816
341729
-
Ser
TGA
[ENA]
¡û
>W1712049968
NFUU01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
2847856
2847943
+
Ser
TGA
[ENA]
¡û
>C171049671
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
677531
677618
+
Ser
TGA
-
¡û
>C171118186
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
841883
841796
-
Ser
TGA
-
¡û
>C171120962
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
954028
953941
-
Ser
TGA
-
¡û
>C000121
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
3907100
3907187
+
Ser
TGA
[Ensembl]
¡û
>WENV180284306
OBID01027272
[OBID] metagenome; sludge
389
476
+
Ser
TGA
[ENA]
¡û
>W141169071
AXVM01000013
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
17575
17488
-
Ser
TGA
[ENA]
¡û
>W141170371
AXXS01000026
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
2756
2843
+
Ser
TGA
[ENA]
¡û
>W141170380
AXXT01000021
Betaproteobacteria
Variovorax sp. JGI 0001013-L10 [AXXT]
1102
1015
-
Ser
TGA
[ENA]
¡û
>WENV183729551
PJTQ01065732
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
208
121
-
Ser
TGA
[ENA]
¡û
>WENV183734506
PJTZ01013161
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
693
606
-
Ser
TGA
[ENA]
¡û
>WENV183744865
PJUL01000470
[PJUL] feces metagenome; Chicken feces enriched on filter paper
25194
25107
-
Ser
TGA
[ENA]
¡û
>WENV170011552
APMI01073770
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2241
2328
+
Ser
TGA
[ENA]
¡û
>WENV170654923
JRYL01089915
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
557
644
+
Ser
TGA
[ENA]
¡û
>WENV170706973
LNAP01010123
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2329
2416
+
Ser
TGA
[ENA]
¡û
>WENV170707041
LNAP01011321
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10
97
+
Ser
TGA
[ENA]
¡û
>WENV170708013
LNAP01044055
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10
97
+
Ser
TGA
[ENA]
¡û
>WENV170711538
LNFM01005756
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11996
11909
-
Ser
TGA
[ENA]
¡û
>WENV170974497
MTKY01063648
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1512
1425
-
Ser
TGA
[ENA]
¡û
>C191063763
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
661659
661746
+
Ser
TGA
-
¡û
>W09105967
AASD01000029
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
12809
12896
+
Ser
TGA
[ENA]
¡û
>W09133933
ACQT01000097
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
239
326
+
Ser
TGA
[ENA]
¡û
>W141558079
JHVQ01000005
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
316756
316669
-
Ser
TGA
[ENA]
¡û
>W1910179187
BJHU01000021
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
102448
102535
+
Ser
TGA
[ENA]
¡û
>W1910699801
MERW01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
25326
25413
+
Ser
TGA
[ENA]
¡û
>W1910972099
NKDB02000002
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
294461
294548
+
Ser
TGA
[ENA]
¡û
>W1911770721
QXJC01000001
Betaproteobacteria
Simplicispira sp. NY-02 [QXJC]
1210760
1210847
+
Ser
TGA
[ENA]
¡û
>W1810046192
NNBQ01000003
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
57254
57167
-
Ser
TGA
[ENA]
¡û
>W1810046291
NNBR01000004
Betaproteobacteria
Variovorax sp. B2 [NNBR]
57255
57168
-
Ser
TGA
[ENA]
¡û
>W1810392038
PXZZ01000011
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
117519
117432
-
Ser
TGA
[ENA]
¡û
>W1810683038
QKVP01000002
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
634580
634667
+
Ser
TGA
[ENA]
¡û
>SRA1014665
SRR023845.250515
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
118
-
Ser
TGA
[SRA]
>SRA1016263
SRR023846.427371
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
159
-
Ser
TGA
[SRA]
>SRA1019743
SRR035082.516512
454 Sequencing (SRP001803)
342
429
+
Ser
TGA
[SRA]
>W2010308718
CABWKX010000004
Betaproteobacteria
Burkholderiales bacterium 8X [CABWKX]
113470
113383
-
Ser
TGA
[ENA]
¡û
>W2010469821
JAAGOW010000001
Betaproteobacteria
Variovorax sp. WS11 [JAAGOW]
1556077
1555990
-
Ser
TGA
[ENA]
¡û
>W2010671993
JACCCD010000001
Betaproteobacteria
Acidovorax sp. YL-MeA13-2016 [JACCCD]
6062584
6062497
-
Ser
TGA
[ENA]
¡û
>W2010833227
MERW01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
25326
25413
+
Ser
TGA
[ENA]
¡û
>W2010918681
MWOK01000003
Betaproteobacteria
Acidovorax sp. SRB_14 [MWOK]
62182
62269
+
Ser
TGA
[ENA]
¡û
>W2011374545
RBJA01000001
Betaproteobacteria
Acidovorax sp. 94 [RBJA]
5253060
5252973
-
Ser
TGA
[ENA]
¡û
>W2011392110
RCCC01000001
Betaproteobacteria
Acidovorax sp. 106 [RCCC]
3376914
3376827
-
Ser
TGA
[ENA]
¡û
>W2011494502
RWKI01000010
Betaproteobacteria
Variovorax sp. MHTC-1 [RWKI]
92076
92163
+
Ser
TGA
[ENA]
¡û
>W2012046906
VIVL01000001
Betaproteobacteria
Variovorax sp. T529 [VIVL]
1222740
1222827
+
Ser
TGA
[ENA]
¡û
>W2012207486
VYGV01000012
Betaproteobacteria
Hydrogenophaga sp. D2P1 [VYGV]
128365
128278
-
Ser
TGA
[ENA]
¡û
>W2110132762
CAKAKO010000001
Betaproteobacteria
Xenophilus sp. Marseille-Q4582 [CAKAKO]
368555
368642
+
Ser
TGA
[ENA]
¡û
>W2110132898
CAKASI010000006
Betaproteobacteria
Acidovorax sp. Leaf73 [CAKASI]
210886
210973
+
Ser
TGA
[ENA]
¡û
>W2110268651
JACVBS010000001
Betaproteobacteria
Variovorax sp. VRV01 [JACVBS]
344513
344600
+
Ser
TGA
[ENA]
¡û
>W2110325776
JADIJT010000001
Betaproteobacteria
Acidovorax sp. SD340 [JADIJT]
73131
73218
+
Ser
TGA
[ENA]
¡û
>W2110408885
JAEFCH010000001
Betaproteobacteria
Acidovorax sp. IB03 [JAEFCH]
41111
41198
+
Ser
TGA
[ENA]
¡û
>W2110517509
JAFMZA010000053
Betaproteobacteria
Acidovorax temperans ATCC 49666 [JAFMZA]
7323
7236
-
Ser
TGA
[ENA]
¡û
>W2110541744
JAGGNV010000048
Betaproteobacteria
Variovorax paradoxus ISL-79 [JAGGNV]
72029
72116
+
Ser
TGA
[ENA]
¡û
>W2110541797
JAGGNW010000026
Betaproteobacteria
Variovorax paradoxus ISL-81 [JAGGNW]
2320
2233
-
Ser
TGA
[ENA]
¡û
>W2110649781
JAHUWV010000001
Betaproteobacteria
Acidovorax sp. sif0613 [JAHUWV]
330929
331016
+
Ser
TGA
[ENA]
¡û
>C201306943
LR594659
Betaproteobacteria
Variovorax sp. PBL-H6 [LR594659]
4884328
4884241
-
Ser
TGA
-
¡û
>C201307078
LR594671
Betaproteobacteria
Variovorax sp. PBL-E5 [LR594671]
4397871
4397785
-
Ser
TGA
-
¡û
>C201307119
LR594675
Betaproteobacteria
Variovorax sp. PBS-H4 [LR594675]
5296221
5296134
-
Ser
TGA
-
¡û
>C211080844
CP049795
Betaproteobacteria
Delftia sp. WY8 [CP049795]
1845278
1845365
+
Ser
TGA
-
¡û
>C211138969
CP060790
Betaproteobacteria
Acidovorax monticola KACC 19171 [CP060790]
4300651
4300564
-
Ser
TGA
-
¡û
>C211172917
CP063166
Betaproteobacteria
Variovorax paradoxus VAI-C [CP063166]
5631850
5631763
-
Ser
TGA
-
¡û
>C211258689
CP069318
Betaproteobacteria
Delftia lacustris R54 [CP069318]
5226633
5226720
+
Ser
TGA
-
¡û
>C231139681
CP075183
Betaproteobacteria
Hydrogenophaga taeniospiralis LT2 [CP075183]
4553945
4554032
+
Ser
TGA
-
¡û
>C231139732
CP075184
Betaproteobacteria
Acidovorax radicis 79 [CP075184]
3924904
3924991
+
Ser
TGA
-
¡û
>C231220548
CP086023
Betaproteobacteria
Acidovorax citrulli HPP21-3-3B [CP086023]
1419976
1419889
-
Ser
TGA
-
¡û
>C231381426
CP097265
Betaproteobacteria
Acidovorax sp. GBBC 712 [CP097265]
4028388
4028475
+
Ser
TGA
-
¡û
>C231415882
CP099605
Betaproteobacteria
Comamonadaceae bacterium OTU4NAUVB1 [CP099605]
756291
756378
+
Ser
TGA
-
¡û
>C231565484
CP115182
Betaproteobacteria
Diaphorobacter sp. ED-3 [CP115182]
1250586
1250499
-
Ser
TGA
-
¡û
>C231651481
LR813084
Betaproteobacteria
Delftia tsuruhatensis BB1455_hybrid [LR813084]
4721766
4721853
+
Ser
TGA
-
¡û
>C241007156
AP022853
Betaproteobacteria
Sulfurimicrobium lacus skT11 [AP022853]
3191564
3191651
+
Ser
TGA
-
¡û
>C241050975
CP040128
Betaproteobacteria
Noviherbaspirillum sp. UKPF54 [CP040128]
1167420
1167507
+
Ser
TGA
-
¡û
>C241094130
CP045291
Betaproteobacteria
Delftia tsuruhatensis TR1180 [CP045291]
5116297
5116384
+
Ser
TGA
-
¡û
>C241175177
CP058970
Betaproteobacteria
Delftia acidovorans B804 [CP058970]
5001876
5001963
+
Ser
TGA
-
¡û
>C241276424
CP127360
Betaproteobacteria
Paracidovorax citrulli KACC 18784 [CP127360]
639613
639526
-
Ser
TGA
-
¡û
>C241276475
CP127361
Betaproteobacteria
Paracidovorax citrulli KACC 18782 [CP127361]
652641
652554
-
Ser
TGA
-
¡û
>C241276627
CP127364
Betaproteobacteria
Paracidovorax citrulli KACC 17001 [CP127364]
1455853
1455766
-
Ser
TGA
-
¡û
>C241380122
LR594662
Betaproteobacteria
Variovorax sp. RA8 [LR594662]
5151961
5151874
-
Ser
TGA
-
¡û
>C241380169
LR594666
Betaproteobacteria
Variovorax sp. SRS16 [LR594666]
4471735
4471649
-
Ser
TGA
-
¡û
>C241380213
LR594689
Betaproteobacteria
Variovorax sp. WDL1 [LR594689]
1872696
1872609
-
Ser
TGA
-
¡û
>W1511352989
JROV01001785
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
1401
1314
-
Ser
TGA
[ENA]
¡û
>W11170770
AFPT01000104
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
15236
15323
+
Ser
TGA
[ENA]
¡û
>W1610685609
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
25843
25930
+
Ser
TGA
[ENA]
¡û
>W1610685652
LKTV01000039
Betaproteobacteria
Variovorax paradoxus [LKTV]
25843
25930
+
Ser
TGA
[ENA]
¡û
>W1610685713
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
6490
6403
-
Ser
TGA
[ENA]
¡û
>W1610685753
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
26766
26853
+
Ser
TGA
[ENA]
¡û
>W1610685809
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
25843
25930
+
Ser
TGA
[ENA]
¡û
>W1610685864
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
25809
25896
+
Ser
TGA
[ENA]
¡û
>W1610727720
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
175118
175031
-
Ser
TGA
[ENA]
¡û
>W1610729891
LMIJ01000003
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
316587
316674
+
Ser
TGA
[ENA]
¡û
>W1610744264
LMTS01000203
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
16107
16194
+
Ser
TGA
[ENA]
¡û
>W1710512954
FMZU01000015
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
129102
129015
-
Ser
TGA
[ENA]
¡û
>W1710532527
FNQJ01000019
Betaproteobacteria
Acidovorax soli [FNQJ]
43758
43671
-
Ser
TGA
[ENA]
¡û
>W1710754787
LHUP01000173
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
44392
44479
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK