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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51899 (51 seq.)
>WENV180275570
OBHT01069629
[OBHT] metagenome; hydrothermal vent
38
125
+
Ser
TGA
[ENA]
¡û
>WENV180277152
OBHV01089021
[OBHV] metagenome; water
81
168
+
Ser
TGA
[ENA]
¡û
>WENV180287156
OBIK01000133
[OBIK] hydrothermal vent metagenome; sea water
6403
6490
+
Ser
TGA
[ENA]
¡û
>WENV180288209
OBIL01086637
[OBIL] metagenome; hydrothermal vent
198
111
-
Ser
TGA
[ENA]
¡û
>WENV180316820
OBKJ01000073
[OBKJ] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV180332476
OBLD01017522
[OBLD] metagenome; water
180
93
-
Ser
TGA
[ENA]
¡û
>WENV180346395
OBLN01084569
[OBLN] sediment metagenome; sediment
237
324
+
Ser
TGA
[ENA]
¡û
>WENV180581348
OCMH01119593
[OCMH] metagenome; diffuse fluid
167
80
-
Ser
TGA
[ENA]
¡û
>WENV180582458
OCMO01100695
[OCMO] metagenome; diffuse fluid
85
172
+
Ser
TGA
[ENA]
¡û
>WENV180583474
OCNB01078020
[OCNB] metagenome; diffuse fluid
101
14
-
Ser
TGA
[ENA]
¡û
>WENV180634674
OCRB01064334
[OCRB] metagenome; diffuse fluid
79
166
+
Ser
TGA
[ENA]
¡û
>WENV181206144
OFAT01000012
[OFAT] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181206552
OFAW01000091
[OFAW] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181207042
OFAY01000091
[OFAY] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181207410
OFAZ01000085
[OFAZ] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181207779
OFBA01000099
[OFBA] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181208149
OFBB01000101
[OFBB] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181208581
OFBC01000088
[OFBC] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181209682
OFBE01024157
[OFBE] metagenome; hydrothermal vent
264
351
+
Ser
TGA
[ENA]
¡û
>WENV181210202
OFBG01010532
[OFBG] metagenome; hydrothermal vent
487
400
-
Ser
TGA
[ENA]
¡û
>WENV181210403
OFBH01002030
[OFBH] metagenome; hydrothermal vent
539
626
+
Ser
TGA
[ENA]
¡û
>WENV181211675
OFBL01001524
[OFBL] metagenome; hydrothermal vent
1313
1400
+
Ser
TGA
[ENA]
¡û
>WENV181214232
OFBW01028430
[OFBW] metagenome; hydrothermal vent
371
458
+
Ser
TGA
[ENA]
¡û
>WENV181214787
OFBY01015506
[OFBY] metagenome; hydrothermal vent
265
178
-
Ser
TGA
[ENA]
¡û
>WENV181223746
OFDD01000090
[OFDD] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181224137
OFDE01000071
[OFDE] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181224370
OFDF01000068
[OFDF] metagenome; hydrothermal vent
8860
8947
+
Ser
TGA
[ENA]
¡û
>WENV181224605
OFDG01000083
[OFDG] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181225317
OFDI01000098
[OFDI] metagenome; hydrothermal vent
4449
4362
-
Ser
TGA
[ENA]
¡û
>WENV181228373
OFDO01016782
[OFDO] metagenome; hydrothermal vent
372
285
-
Ser
TGA
[ENA]
¡û
>WENV181412382
OGCK01000039
[OGCK] hot springs metagenome; hot spring sediment
18995
18908
-
Ser
TGA
[ENA]
¡û
>C08010670
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
2520922
2521009
+
Ser
TGA
[Ensembl]
¡û
>WENV170000983
AGBJ01000117
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
9101
9188
+
Ser
TGA
[ENA]
¡û
>WENV170575508
FPHB01000054
[FPHB] hydrothermal vent metagenome genome assembly, contig: NODE_29.; water
6532
6619
+
Ser
TGA
[ENA]
¡û
>WENV170575582
FPHE01000129
[FPHE] hydrothermal vent metagenome genome assembly, contig: NODE_55.; water
6876
6789
-
Ser
TGA
[ENA]
¡û
>WENV170575671
FPHI01000015
[FPHI] hydrothermal vent metagenome genome assembly, contig: NODE_44.; water
2830
2743
-
Ser
TGA
[ENA]
¡û
>WENV170575767
FPHM01000248
[FPHM] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
13010
13097
+
Ser
TGA
[ENA]
¡û
>WENV170576100
FPIB01000006
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
2393
2480
+
Ser
TGA
[ENA]
¡û
>WENV170576154
FPKX01000064
[FPKX] hydrothermal vent metagenome; water
531
444
-
Ser
TGA
[ENA]
¡û
>WENV170577441
FRYL01000030
[FRYL] hydrothermal vent metagenome; water
18813
18900
+
Ser
TGA
[ENA]
¡û
>WENV170674539
LBBO01000005
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
98138
98051
-
Ser
TGA
[ENA]
¡û
>WENV170674567
LBBO01000271
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
82388
82475
+
Ser
TGA
[ENA]
¡û
>WENV170698133
LGVF01267226
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
850
763
-
Ser
TGA
[ENA]
¡û
>C151079557
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
2203394
2203481
+
Ser
TGA
[Ensembl]
¡û
>W2110070301
BPFI01000001
Campylobacterota
Sulfurovum sp. TSL1 [BPFI]
1674609
1674522
-
Ser
TGA
[ENA]
¡û
>W2110070350
BPFJ01000002
Campylobacterota
Sulfurovum sp. TSL6 [BPFJ]
654443
654356
-
Ser
TGA
[ENA]
¡û
>C211172844
CP063164
Campylobacterota
Sulfurovum indicum ST-419 [CP063164]
119941
119854
-
Ser
TGA
-
¡û
>C231235046
CP087124
Campylobacterota
Sulfurovum sp. HSL1-3 [CP087124]
2486230
2486143
-
Ser
TGA
-
¡û
>C231331375
CP093312
Campylobacterota
Sulfurovum sp. XGS-02 [CP093312]
2098564
2098477
-
Ser
TGA
-
¡û
>W1511327867
JQIR01000002
Campylobacterota
Sulfurovum sp. FS06-10 [JQIR]
89598
89685
+
Ser
TGA
[ENA]
¡û
>W121063636
AJLE01000009
Campylobacterota
Sulfurovum sp. AR [AJLE]
11703
11616
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK