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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52065 (37 seq.)
>W131191149
ASHR01000023
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
21098
21183
+
Ser
TGA
[ENA]
¡û
>W131234877
AULD01000005
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
149845
149760
-
Ser
TGA
[ENA]
¡û
>W1711505486
MKVN01000040
Actinomycetota
Micrococcales bacterium 73-13 [MKVN]
44538
44623
+
Ser
TGA
[ENA]
¡û
>WENV180099907
OANK01003284
[OANK] marine metagenome; ENVO:00002010
126
213
+
Ser
TGA
[ENA]
¡û
>WENV180101058
OAOU01000082
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
15686
15773
+
Ser
TGA
[ENA]
¡û
>WENV180380327
OBOQ01027766
[OBOQ] marine metagenome; Fridge
185
272
+
Ser
TGA
[ENA]
¡û
>WENV180585366
OCOL01003284
[OCOL] marine metagenome; ENVO:00002010
126
213
+
Ser
TGA
[ENA]
¡û
>WENV180635326
OCRD01009413
[OCRD] marine metagenome; seawater
334
247
-
Ser
TGA
[ENA]
¡û
>WENV180641684
OCRN01025934
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
320
233
-
Ser
TGA
[ENA]
¡û
>WENV170133423
CENU01024989
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
301
388
+
Ser
TGA
[ENA]
¡û
>WENV170974842
MTKY01077153
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1622
1535
-
Ser
TGA
[ENA]
¡û
>WENV170977774
MTKZ01031221
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4771
4858
+
Ser
TGA
[ENA]
¡û
>C181169612
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
254881
254966
+
Ser
TGA
-
¡û
>C191056058
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
502630
502715
+
Ser
TGA
-
¡û
>C191092509
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
1446087
1446172
+
Ser
TGA
-
¡û
>W1910231928
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
491705
491617
-
Ser
TGA
[ENA]
¡û
>SRA1000734
SRR001046.232575
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
23
109
+
Ser
TGA
[SRA]
>W2010099820
BJUU01000003
Actinomycetota
Agrococcus baldri NBRC 103055 [BJUU]
52216
52301
+
Ser
TGA
[ENA]
¡û
>W2010385471
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
491705
491617
-
Ser
TGA
[ENA]
¡û
>W2011391832
RBZZ01000038
Actinomycetota
Agrococcus lahaulensis LZB059 [RBZZ]
5567
5482
-
Ser
TGA
[ENA]
¡û
>W2011447450
RKHJ01000001
Actinomycetota
Agrococcus jenensis DSM 9580 [RKHJ]
587652
587567
-
Ser
TGA
[ENA]
¡û
>W2012000125
VEFR01000003
Actinomycetota
Agrococcus jejuensis DE0131 [VEFR]
102506
102591
+
Ser
TGA
[ENA]
¡û
>W2012034439
VHQF01000738
Actinomycetota
Schumannella luteola KHIA [VHQF]
1418
1503
+
Ser
TGA
[ENA]
¡û
>W2012104609
VOIR01000011
Actinomycetota
Agrococcus sp. NS18 [VOIR]
549265
549350
+
Ser
TGA
[ENA]
¡û
>W2012126357
VRTZ01000001
Actinomycetota
Homoserinibacter sp. GY 40078 [VRTZ]
351079
350994
-
Ser
TGA
[ENA]
¡û
>W2110030391
BMLM01000002
Actinomycetota
Agrococcus terreus CGMCC 1.6960 [BMLM]
535673
535588
-
Ser
TGA
[ENA]
¡û
>W2110038214
BMRJ01000002
Actinomycetota
Agromyces mediolanus JCM 3346 [BMRJ]
182053
182138
+
Ser
TGA
[ENA]
¡û
>W2110185912
JABUKC010000001
Actinomycetota
Yonghaparkia alkaliphila GA224 [JABUKC]
135461
135546
+
Ser
TGA
[ENA]
¡û
>W2110516248
JAFMTA010000001
Actinomycetota
Naasia sp. SYSU D00948 [JAFMTA]
1309544
1309629
+
Ser
TGA
[ENA]
¡û
>W2110522605
JAGEKO010000008
Actinomycetota
Agrococcus sp. TF02-5 [JAGEKO]
154792
154707
-
Ser
TGA
[ENA]
¡û
>C211277183
CP070501
Actinomycetota
Agrococcus sp. Marseille-Q4369 [CP070501]
2216900
2216985
+
Ser
TGA
-
¡û
>C211294579
CP071696
Actinomycetota
Agromyces sp. G127AT [CP071696]
2064017
2064102
+
Ser
TGA
-
¡û
>C211426155
OU365335
Actinomycetota
Pseudoclavibacter sp. 125703-2019 [OU365335]
925402
925487
+
Ser
TGA
-
¡û
>C231345612
CP094528
Actinomycetota
Agromyces sp. CFWR-12 [CP094528]
3420330
3420415
+
Ser
TGA
-
¡û
>C231359291
CP095269
Actinomycetota
Agrococcus sp. SCSIO52902 [CP095269]
617171
617086
-
Ser
TGA
-
¡û
>C241080677
CP043504
Actinomycetota
Protaetiibacter larvae KACC 19322 [CP043504]
476758
476672
-
Ser
TGA
-
¡û
>W1610742084
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
628434
628519
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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