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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52262 (59 seq.)
>C007397
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
2255590
2255503
-
Ser
GGA
[Ensembl]
¡û
>C007431
CP000240
Cyanobacteriota
Synechococcus sp. JA-2-3B'a[2-13] [CP000240]
2510766
2510850
+
Ser
GGA
[Ensembl]
¡û
>C025507
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
153813
153897
+
Ser
GGA
[Ensembl]
¡û
>WENV180013462
FMSI01086933
[FMSI] soil metagenome; Soil
86
-1
-
Ser
GGA
[ENA]
¡û
>WENV181412230
OGCI01101528
[OGCI] hot springs metagenome; Hot spring water
432
516
+
Ser
GGA
[ENA]
¡û
>WENV181414139
OGCL01000045
[OGCL] hot springs metagenome; Hot spring water
36318
36402
+
Ser
GGA
[ENA]
¡û
>WENV170000507
AFSR01000022
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
7620
7534
-
Ser
GGA
[ENA]
¡û
>WENV170000522
AFSR01000052
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
36177
36265
+
Ser
GGA
[ENA]
¡û
>WENV170000826
AFSR01005854
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1039
951
-
Ser
GGA
[ENA]
¡û
>C181030493
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
628438
628354
-
Ser
GGA
-
¡û
>C191001200
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
461935
462022
+
Ser
GGA
-
¡û
>C191085240
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
327508
327420
-
Ser
GGA
-
¡û
>W1910002830
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
2480171
2480258
+
Ser
GGA
[ENA]
¡û
>W1910002868
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
1888688
1888775
+
Ser
GGA
[ENA]
¡û
>W1910005398
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
1419718
1419631
-
Ser
GGA
[ENA]
¡û
>W1910005414
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
103978
104065
+
Ser
GGA
[ENA]
¡û
>W1910005475
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
2315417
2315504
+
Ser
GGA
[ENA]
¡û
>W1910005514
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
1655296
1655383
+
Ser
GGA
[ENA]
¡û
>C141007957
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
240003
239915
-
Ser
GGA
-
¡û
>W2010072557
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
2480171
2480258
+
Ser
GGA
[ENA]
¡û
>W2010072595
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
1888688
1888775
+
Ser
GGA
[ENA]
¡û
>W2010073586
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
1419718
1419631
-
Ser
GGA
[ENA]
¡û
>W2010073602
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
103978
104065
+
Ser
GGA
[ENA]
¡û
>W2010073663
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
2315417
2315504
+
Ser
GGA
[ENA]
¡û
>W2010073702
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
1655296
1655383
+
Ser
GGA
[ENA]
¡û
>C201088941
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2143459
2143547
+
Ser
GGA
-
¡û
>C211280916
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
1507685
1507597
-
Ser
GGA
-
¡û
>C231248734
CP088016
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [CP088016]
1178403
1178487
+
Ser
GGA
-
¡û
>C231396156
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
319036
319122
+
Ser
GGA
-
¡û
>C231653660
OV696605
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [OV696605]
1178403
1178487
+
Ser
GGA
-
¡û
>C241188881
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2169031
2169119
+
Ser
GGA
-
¡û
>C241190859
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2146303
2146391
+
Ser
GGA
-
¡û
>C241192275
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2148582
2148670
+
Ser
GGA
-
¡û
>C241293665
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
1532734
1532646
-
Ser
GGA
-
¡û
>C241293696
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2172187
2172275
+
Ser
GGA
-
¡û
>C241293725
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1764439
1764527
+
Ser
GGA
-
¡û
>C241316053
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
1501551
1501463
-
Ser
GGA
-
¡û
>C241316091
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
1533501
1533413
-
Ser
GGA
-
¡û
>C241316129
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
1533651
1533563
-
Ser
GGA
-
¡û
>C241316167
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
1503000
1502912
-
Ser
GGA
-
¡û
>C241316205
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
1512746
1512658
-
Ser
GGA
-
¡û
>C241316243
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
1512746
1512658
-
Ser
GGA
-
¡û
>C241316281
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
1512957
1512869
-
Ser
GGA
-
¡û
>C241316319
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
1512960
1512872
-
Ser
GGA
-
¡û
>C241316357
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
1512879
1512791
-
Ser
GGA
-
¡û
>C241316395
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
1521731
1521643
-
Ser
GGA
-
¡û
>C241316433
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
1521801
1521713
-
Ser
GGA
-
¡û
>C241316471
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
1522050
1521962
-
Ser
GGA
-
¡û
>C241316509
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
1528390
1528302
-
Ser
GGA
-
¡û
>C241316547
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
1528390
1528302
-
Ser
GGA
-
¡û
>C241316569
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1764440
1764528
+
Ser
GGA
-
¡û
>C241316623
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
1511806
1511718
-
Ser
GGA
-
¡û
>C241316654
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2172187
2172275
+
Ser
GGA
-
¡û
>C241316692
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2172032
2172120
+
Ser
GGA
-
¡û
>C241316794
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2154090
2154178
+
Ser
GGA
-
¡û
>WENV11100850
AFSR01000022
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
7620
7534
-
Ser
GGA
[ENA]
¡û
>WENV11100865
AFSR01000052
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
36177
36265
+
Ser
GGA
[ENA]
¡û
>WENV11101169
AFSR01005854
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1039
951
-
Ser
GGA
[ENA]
¡û
>C131004317
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
3335015
3335101
+
Ser
GGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK