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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.524637 (9 seq.)
>WENV181170261
OEIV010033866
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
610
685
+
Ala
TGC
[ENA]
¡û
>WENV181221730
OFCW01005401
[OFCW] microbial mat metagenome; Microbial Mat
416
491
+
Ala
TGC
[ENA]
¡û
>WENV170003146
AGTN01240506
[AGTN] bioreactor metagenome; poplar biomass
246
171
-
Ala
TGC
[ENA]
¡û
>SRA1001891
SRR001308.112274
Metagenomic characterization of a wastewater treatment plant (SRP000180)
106
31
-
Ala
TGC
[SRA]
>W2012216932
VZDO01000034
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
2266
2341
+
Ala
TGC
[ENA]
¡û
>W2110026844
BMIQ01000021
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
3987
3912
-
Ala
TGC
[ENA]
¡û
>C211024521
AP024629
Alphaproteobacteria
Alphaproteobacteria bacterium SO-S41 [AP024629]
1142275
1142350
+
Ala
TGC
-
¡û
>C211024529
AP024629
Alphaproteobacteria
Alphaproteobacteria bacterium SO-S41 [AP024629]
2052791
2052866
+
Ala
TGC
-
¡û
>C241058499
CP041636
Alphaproteobacteria
Ferrovibrio terrae K5 [CP041636]
777000
776925
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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