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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.532530 (41 seq.)
>W1710883247
LMVQ01000102
Actinomycetota
Mycobacterium sp. NAZ190054 [LMVQ]
10846
10921
+
Thr
CGT
[ENA]
¡û
>W1711006803
LQOQ01000024
Actinomycetota
Mycolicibacterium confluentis [LQOQ]
29217
29142
-
Thr
CGT
[ENA]
¡û
>W1711276107
LZHW01000039
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
28213
28138
-
Thr
CGT
[ENA]
¡û
>C171100691
CP019882
Actinomycetota
Mycolicibacterium litorale F4 [CP019882]
5466262
5466187
-
Thr
CGT
-
¡û
>W131239608
BANU01000038
Actinomycetota
Gordonia sihwensis NBRC 108236 [BANU]
636
561
-
Thr
CGT
[ENA]
¡û
>WENV183511899
OMJG01010706
[OMJG] food metagenome; Cotija cheese
553
479
-
Thr
CGT
[ENA]
¡û
>WENV170252798
CEQU01030445
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
130
55
-
Thr
CGT
[ENA]
¡û
>W141406671
JDYK01000009
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
40440
40515
+
Thr
CGT
[ENA]
¡û
>WENV170403627
CEUF01111374
[CEUF] marine metagenome genome assembly TARA_138_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
305
230
-
Thr
CGT
[ENA]
¡û
>WENV170812719
MDSW01188193
[MDSW] marine metagenome; seawater
5902
5827
-
Thr
CGT
[ENA]
¡û
>WENV170888472
MDTC01258468
[MDTC] marine metagenome; seawater
6167
6242
+
Thr
CGT
[ENA]
¡û
>WENV170894697
MDTD01069296
[MDTD] marine metagenome; seawater
24707
24632
-
Thr
CGT
[ENA]
¡û
>C181117248
CP025435
Actinomycetota
Gordonia sp. YC-JH1 [CP025435]
1061800
1061726
-
Thr
CGT
-
¡û
>C181153057
CP027433
Actinomycetota
Gordonia iterans Co17 [CP027433]
3967969
3968042
+
Thr
CGT
-
¡û
>W1910442426
FWFG01000001
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
13536
13610
+
Thr
CGT
[ENA]
¡û
>W1911385791
NVQF01000077
Actinomycetota
Mycobacterium sp. CECT 8779 [NVQF]
8436
8361
-
Thr
CGT
[ENA]
¡û
>W1810052768
PDCQ01000053
Actinomycetota
Mycolicibacterium duvalii IP141180004 [PDCQ]
14274
14349
+
Thr
CGT
[ENA]
¡û
>W2010405790
FWFG01000001
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
13536
13610
+
Thr
CGT
[ENA]
¡û
>W2011133042
NVQF01000077
Actinomycetota
Mycobacterium sp. CECT 8779 [NVQF]
8436
8361
-
Thr
CGT
[ENA]
¡û
>W2012357126
WKJD01000003
Actinomycetota
Agromyces sp. Q22 [WKJD]
9206
9281
+
Thr
CGT
[ENA]
¡û
>W2110016709
BLTG01000066
Actinomycetota
Mycobacterium sp. PO1 [BLTG]
26598
26524
-
Thr
CGT
[ENA]
¡û
>W2110016751
BLTH01000085
Actinomycetota
Mycobacterium sp. PO2 [BLTH]
28507
28433
-
Thr
CGT
[ENA]
¡û
>W2110648485
JAHUUK010000005
Actinomycetota
Dermabacteraceae bacterium TAE3-ERU5 [JAHUUK]
145433
145358
-
Thr
CGT
[ENA]
¡û
>W2110648535
JAHUUL010000003
Actinomycetota
Dermabacteraceae bacterium TAE3-ERU27 [JAHUUL]
145583
145508
-
Thr
CGT
[ENA]
¡û
>W2110677609
JAIFZS010000006
Actinomycetota
Mycobacterium sp. Y57 [JAIFZS]
141582
141657
+
Thr
CGT
[ENA]
¡û
>W2110677705
JAIGNG010000010
Actinomycetota
Mycolicibacterium sp. 3033 [JAIGNG]
316705
316779
+
Thr
CGT
[ENA]
¡û
>C201016634
AP022563
Actinomycetota
Mycolicibacterium duvalii JCM 6396 [AP022563]
5035109
5035184
+
Thr
CGT
-
¡û
>C201016973
AP022570
Actinomycetota
Mycolicibacterium poriferae JCM 12603 [AP022570]
39276
39202
-
Thr
CGT
-
¡û
>C201018562
AP022612
Actinomycetota
Mycolicibacterium confluentis JCM 13671 [AP022612]
29482
29557
+
Thr
CGT
-
¡û
>C201156979
CP045325
Actinomycetota
Mycobacterium sp. THAF192 [CP045325]
5222388
5222314
-
Thr
CGT
-
¡û
>C231163461
CP079869
Actinomycetota
Mycobacterium sp. SMC-4 [CP079869]
4960241
4960166
-
Thr
CGT
-
¡û
>W2110746911
LHVQ01000020
Actinomycetota
Gordonia sihwensis MTZ 096 [LHVQ]
1003
930
-
Thr
CGT
[ENA]
¡û
>W2110746940
LHVQ01000131
Actinomycetota
Gordonia sihwensis MTZ 096 [LHVQ]
307
234
-
Thr
CGT
[ENA]
¡û
>C231247002
CP087879
Actinomycetota
Agromyces marinus DSM 26151 [CP087879]
847154
847229
+
Thr
CGT
-
¡û
>C231315347
CP092365
Actinomycetota
Mycolicibacillus parakoreensis DSM 45575 [CP092365]
354731
354804
+
Thr
CGT
-
¡û
>C231364796
CP095864
Actinomycetota
Gordonia sp. PP30 [CP095864]
4187299
4187374
+
Thr
CGT
-
¡û
>C231638948
CP121248
Actinomycetota
Gordonia sihwensis RL-BY03 [CP121248]
3634729
3634803
+
Thr
CGT
-
¡û
>C241011963
AP027734
Actinomycetota
Agromyces marinus NBRC 109019 [AP027734]
921619
921544
-
Thr
CGT
-
¡û
>W1511540022
JZDP01000114
Actinomycetota
Gordonia sihwensis no. 9 [JZDP]
244
171
-
Thr
CGT
[ENA]
¡û
>W1610745173
LMVQ01000102
Actinomycetota
Mycobacterium sp. NAZ190054 [LMVQ]
10846
10921
+
Thr
CGT
[ENA]
¡û
>W1611035392
LZHW01000039
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
28213
28138
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK